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Spg034319 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034319
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationscaffold12:21746983..21753694
RNA-Seq ExpressionSpg034319
SyntenySpg034319
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_024018055.1 uncharacterized protein LOC112090603 [Morus notabilis]5.2e-0838.79Show/hide
Query:  SSQMDSVLGRNIPLLESVSLVHERSAWVVSHQQPPAMELAAVVNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEP----SKP
        SS ++S+L   I   E+    H+ + W +              NQVGQ+AN LK RPQG LPS+T+ PRR+GKE  KA+TLR G+ LE R +P    ++P
Subjt:  SSQMDSVLGRNIPLLESVSLVHERSAWVVSHQQPPAMELAAVVNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEP----SKP

Query:  QDVGKNCDKNVVDEKE
          + +  +K  + +KE
Subjt:  QDVGKNCDKNVVDEKE

XP_030483210.1 uncharacterized protein LOC115699807 [Cannabis sativa]1.4e-0857.58Show/hide
Query:  QPPAMELAAVVNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEPSKPQD
        Q  A  +  + NQVGQLANEL+ RPQG LPSDT++PRR+GKE  KAV LRSG+ LE  +E +K ++
Subjt:  QPPAMELAAVVNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEPSKPQD

XP_030497589.1 uncharacterized protein LOC115713246 [Cannabis sativa]4.7e-0951.9Show/hide
Query:  QPPAMELAAVVNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPL----EERKEPSKPQDVGKNCDKNV
        Q  A  +  + NQVGQL NEL+ RPQG LPSDT++PRR+GKE  KAV LRSG+ L    EE K+ ++P  +    +KNV
Subjt:  QPPAMELAAVVNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPL----EERKEPSKPQDVGKNCDKNV

XP_030502450.1 uncharacterized protein LOC115717606 [Cannabis sativa]2.4e-0832.05Show/hide
Query:  LCCNKAGSKTATSQLVSQFN-EPKFVELFSDLRSLESLPRVQIDLIRPCYHSIKGEAVSSQMDSVLGRNIPLLESVSLVHERSAWVVSHQQPPAMELAAV
        L     G+ T+ S ++ + N +P F +     R  + +    ++ +  C   +K E   ++ +S + +N   + S S                   +  +
Subjt:  LCCNKAGSKTATSQLVSQFN-EPKFVELFSDLRSLESLPRVQIDLIRPCYHSIKGEAVSSQMDSVLGRNIPLLESVSLVHERSAWVVSHQQPPAMELAAV

Query:  VNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEPSKPQD
         NQVGQLA+EL+ RPQ  LPSDT++PRR+GKE  KAVTLRSG+ LE  +E +  Q+
Subjt:  VNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEPSKPQD

XP_030508913.1 uncharacterized protein LOC115723563 [Cannabis sativa]6.2e-0958.82Show/hide
Query:  NQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPL----EERKEPSKPQDVGKNCDKNV
        NQVGQLANEL+ RPQG LPSDT++PRR+GKE  KAV LRSG+ L    EE K+ ++P  +    +KNV
Subjt:  NQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPL----EERKEPSKPQDVGKNCDKNV

TrEMBL top hitse value%identityAlignment
A0A5B6WDZ4 Retrotransposon gag protein3.1e-0633.12Show/hide
Query:  LVSQFNEPKFVELFSDLRSL------ESLPR-VQIDLIRPCYHSIKGEA----VSSQMDSVLGRNIPLLESVSLVHERSAWVVSHQQPPAMELAAVVNQV
        L  Q +E    EL+     L       S+P  +Q++     Y+ +K        +S  ++ L ++ P+  S +L    + ++  +     + L  + NQV
Subjt:  LVSQFNEPKFVELFSDLRSL------ESLPR-VQIDLIRPCYHSIKGEA----VSSQMDSVLGRNIPLLESVSLVHERSAWVVSHQQPPAMELAAVVNQV

Query:  GQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPL-----EERKEPSKPQDVGK
        GQL NEL++RPQG LPSD K+PR  GKE  KAVTLR+ + L     E   EPS  Q+  K
Subjt:  GQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPL-----EERKEPSKPQDVGK

A0A6J1D1N1 uncharacterized protein LOC1110161891.1e-0654.05Show/hide
Query:  QVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEP---SKPQDVGKNCDKNVVDEKELES
        QVGQ AN+LKARPQG  P  TK P+R+GKEQ KA+TLRSG   EE K P    KP    +N    V  EK   S
Subjt:  QVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEP---SKPQDVGKNCDKNVVDEKELES

A0A6J1DPM2 uncharacterized protein LOC1110223665.3e-0653.25Show/hide
Query:  QVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERK---EPSKPQDVGKNCDKNVVDEKELESGQG
        QVGQLAN+LKARPQG +P  T+ P+R GKEQ KAVTLRSG   E  K   E  KP    +N       EK   SG+G
Subjt:  QVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERK---EPSKPQDVGKNCDKNVVDEKELESGQG

A0A6J1DTH7 uncharacterized protein LOC1110229719.0e-0650.65Show/hide
Query:  QVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEP---SKPQDVGKNCDKNVVDEKELESGQG
        Q+GQL+N+LKARPQG  P  T+ P+R+GKEQ KAVTLRSG   E  K P    KP    +N       EK   SG+G
Subjt:  QVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEP---SKPQDVGKNCDKNVVDEKELESGQG

A0A6J1H7K8 uncharacterized protein LOC1114611671.1e-0646.07Show/hide
Query:  RNIPLLESVSLVHE---RSAWVVSHQQPPAMELAAVVNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEPSK
        ++IP     SL+ E   ++  V+  QQ     L     QVGQLANEL+ RP GKLPSDT+ P+REG EQ +A+ LRSG+ +  R+E  K
Subjt:  RNIPLLESVSLVHE---RSAWVVSHQQPPAMELAAVVNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEPSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAACTCGGATTCTCCCTCGACGTGGCTGGCATTGTCGAAAAAGGAGTTTGAGCGTTGGGCTCTTGGTTCACGATCGCTGGCGAGAAACCTGTGGGTCTCGTCCTT
CTCGTGCCGTGCATGGGTGTTTTGGGGTTCTCTTCTTGCCGTCGAACACTTGCTTCAACTTCGTGGGTGCGTCGAGACCCTAGTTTCTGGGTGTCTCGACGCTGGAATTT
TCCTTATTTTATTCAAGCAGAAAAAAGCACAGCGTCGAGACACTGTGCTAGAGCTTCTCGACGCTCTTGGAATTTTCCTAAACAGAATGCACGGTTTGCGACAGCATCGC
GATGCTCTGAAGCAAGTTCAAGGAGTGGGATTTGAAGGCTTTGCTCGTGGAGATCGTGACGGGGACAGGGAGCAAATTTTGTGCTGCAACAAAGCTGGGAGCAAAACTGC
CACGTCACAGCTCGTTAGCCAATTTAATGAGCCGAAGTTTGTTGAGCTATTCTCAGATTTAAGAAGCTTGGAAAGCCTGCCACGTGTCCAAATTGACCTAATTAGGCCTT
GCTATCACTCTATAAAAGGAGAGGCCGTCTCAAGTCAAATGGATTCCGTTCTTGGGAGGAACATTCCACTCTTGGAAAGTGTGAGTTTGGTGCATGAGCGATCCGCCTGG
GTGGTTAGTCATCAGCAGCCGCCAGCTATGGAGCTTGCTGCAGTGGTGAACCAAGTGGGCCAGCTAGCTAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCCTTCAGA
TACTAAACACCCTAGAAGGGAAGGTAAGGAGCAGGTAAAAGCAGTGACTCTAAGGAGTGGTCAGCCACTAGAAGAGAGAAAAGAGCCTAGTAAACCCCAGGATGTAGGAA
AGAATTGTGATAAAAATGTTGTTGATGAGAAAGAGTTAGAGTCTGGTCAGGGTGCTGGAGGATGTAGGATAGTTTCTGTAGGTTGCGCTAGAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGAACTCGGATTCTCCCTCGACGTGGCTGGCATTGTCGAAAAAGGAGTTTGAGCGTTGGGCTCTTGGTTCACGATCGCTGGCGAGAAACCTGTGGGTCTCGTCCTT
CTCGTGCCGTGCATGGGTGTTTTGGGGTTCTCTTCTTGCCGTCGAACACTTGCTTCAACTTCGTGGGTGCGTCGAGACCCTAGTTTCTGGGTGTCTCGACGCTGGAATTT
TCCTTATTTTATTCAAGCAGAAAAAAGCACAGCGTCGAGACACTGTGCTAGAGCTTCTCGACGCTCTTGGAATTTTCCTAAACAGAATGCACGGTTTGCGACAGCATCGC
GATGCTCTGAAGCAAGTTCAAGGAGTGGGATTTGAAGGCTTTGCTCGTGGAGATCGTGACGGGGACAGGGAGCAAATTTTGTGCTGCAACAAAGCTGGGAGCAAAACTGC
CACGTCACAGCTCGTTAGCCAATTTAATGAGCCGAAGTTTGTTGAGCTATTCTCAGATTTAAGAAGCTTGGAAAGCCTGCCACGTGTCCAAATTGACCTAATTAGGCCTT
GCTATCACTCTATAAAAGGAGAGGCCGTCTCAAGTCAAATGGATTCCGTTCTTGGGAGGAACATTCCACTCTTGGAAAGTGTGAGTTTGGTGCATGAGCGATCCGCCTGG
GTGGTTAGTCATCAGCAGCCGCCAGCTATGGAGCTTGCTGCAGTGGTGAACCAAGTGGGCCAGCTAGCTAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCCTTCAGA
TACTAAACACCCTAGAAGGGAAGGTAAGGAGCAGGTAAAAGCAGTGACTCTAAGGAGTGGTCAGCCACTAGAAGAGAGAAAAGAGCCTAGTAAACCCCAGGATGTAGGAA
AGAATTGTGATAAAAATGTTGTTGATGAGAAAGAGTTAGAGTCTGGTCAGGGTGCTGGAGGATGTAGGATAGTTTCTGTAGGTTGCGCTAGAATGTAA
Protein sequenceShow/hide protein sequence
MTNSDSPSTWLALSKKEFERWALGSRSLARNLWVSSFSCRAWVFWGSLLAVEHLLQLRGCVETLVSGCLDAGIFLILFKQKKAQRRDTVLELLDALGIFLNRMHGLRQHR
DALKQVQGVGFEGFARGDRDGDREQILCCNKAGSKTATSQLVSQFNEPKFVELFSDLRSLESLPRVQIDLIRPCYHSIKGEAVSSQMDSVLGRNIPLLESVSLVHERSAW
VVSHQQPPAMELAAVVNQVGQLANELKARPQGKLPSDTKHPRREGKEQVKAVTLRSGQPLEERKEPSKPQDVGKNCDKNVVDEKELESGQGAGGCRIVSVGCARM