; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034332 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034332
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold12:21414030..21417656
RNA-Seq ExpressionSpg034332
SyntenySpg034332
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.8e-2231.64Show/hide
Query:  CSHKRVAAFSILLARKGELIKAFYKSKFSMKSLITRINLVDLFSMFIAYVRLQAQETEIAEIKGRMNEMGQNLTEILSLLKKPESV--RHEEEHLRRDPK
        C  + VA    +  R  E ++  Y ++F+ + L     L D  S+      ++ +    +  K   N   + L+     +   E    + E +  R DPK
Subjt:  CSHKRVAAFSILLARKGELIKAFYKSKFSMKSLITRINLVDLFSMFIAYVRLQAQETEIAEIKGRMNEMGQNLTEILSLLKKPESV--RHEEEHLRRDPK

Query:  K------------EAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLK
        +            E ++   + +P  K+ +YT  T  ++QVL  I+D  LLK PER+++   +R++ +YC+FH DH H TQ+C  L++E+E LIR GYLK
Subjt:  K------------EAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLK

Query:  EFVGQDREKRPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRRALEER
        E+V     + P  T+ G+   +P  EIRTI+GG    ES RKRKA  R  R   E+
Subjt:  EFVGQDREKRPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRRALEER

XP_030932439.1 uncharacterized protein LOC115958186 [Quercus lobata]4.0e-2239.01Show/hide
Query:  MNEMGQNLTEILSLLKKPES--VRHEEE--HLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGD
        MN     +T+    ++K E+   RH E+   L++   ++ K+   +  P A+  +YT L   LDQVL  ++D   LK PE+++ DP++RNRNKYC FH D
Subjt:  MNEMGQNLTEILSLLKKPES--VRHEEE--HLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGD

Query:  HDHTTQECIQLRDEIETLIREGYLKEFVGQDR--EKRPSPTEQGKGGNNPPL-EIRTILGGCSGGESSRKRKAAFRFRRALE
        H H T EC  L+ +IE LIR+G L+ F+G+D   EK     E+    + PPL EIR I+GG S  +SSR RK   +  ++++
Subjt:  HDHTTQECIQLRDEIETLIREGYLKEFVGQDR--EKRPSPTEQGKGGNNPPL-EIRTILGGCSGGESSRKRKAAFRFRRALE

XP_030936700.1 uncharacterized protein LOC115961955 [Quercus lobata]2.8e-2338.14Show/hide
Query:  LQAQETEIAEIKGRMNEMGQNLTEILSLLKKPESVRHEEE--HLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDR
        + A++  IA+ + ++ +M  N T            RH E+  HL++   ++ K+   +A P  +  +YT L   LDQVL  I+D   LK PE+++ DP++
Subjt:  LQAQETEIAEIKGRMNEMGQNLTEILSLLKKPESVRHEEE--HLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDR

Query:  RNRNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLKEFVGQDR--EKRPSPTEQGKGGNNPPL-EIRTILGGCSGGESSRKRKAAFRFRRALE
        RNRNKYC FH DH H T EC  L+ +IE LIR+G L+ F+G+D   EK     E+    + PPL EIR I+GG S  +SSR RK   +  ++++
Subjt:  RNRNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLKEFVGQDR--EKRPSPTEQGKGGNNPPL-EIRTILGGCSGGESSRKRKAAFRFRRALE

XP_030945650.1 uncharacterized protein LOC115970119 [Quercus lobata]2.4e-2239.58Show/hide
Query:  LQAQETEIAEIKGRMNEMGQNLTEILSLLKKPESVRHEEEHLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRN
        + A++  IA+ + R   +  NL   L    +P+  R  E+   RD KK            A+  +YTSL   L+QVL  I+D   LK PE++R DP++RN
Subjt:  LQAQETEIAEIKGRMNEMGQNLTEILSLLKKPESVRHEEEHLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRN

Query:  RNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLKEFVGQDR--EKRPSPTEQGKGGNNPPL-EIRTILGGCSGGESSRKRKAAFRFRRALE
        RNKYC FH DH H   EC  L+ +IE LIR+G LK F+G+D   EK     E+      PPL EIR I+GG S G+SS+ +KA  +  ++++
Subjt:  RNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLKEFVGQDR--EKRPSPTEQGKGGNNPPL-EIRTILGGCSGGESSRKRKAAFRFRRALE

XP_030970531.1 uncharacterized protein LOC115990904 [Quercus lobata]6.2e-2339.58Show/hide
Query:  LQAQETEIAEIKGRMNEMGQNLTEILSLLKKPESVRHEEEHLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRN
        + A++  IA+ + R   M  N +       +P+  R EE   RRD  +E+K    +  P  +  +YT L A L+QVL  I+D   LK P++++ DP++RN
Subjt:  LQAQETEIAEIKGRMNEMGQNLTEILSLLKKPESVRHEEEHLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRN

Query:  RNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLKEFVGQDR--EKRPSPTEQGKGGNNPPL-EIRTILGGCSGGESSRKRKAAFRFRRALE
        RNKYC FH DH H T EC  L+ +IE LIR+G L+ F+GQD+  EK+    E+    + PPL EIR I+GG S G+SS+ +KA  +  ++++
Subjt:  RNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLKEFVGQDR--EKRPSPTEQGKGGNNPPL-EIRTILGGCSGGESSRKRKAAFRFRRALE

TrEMBL top hitse value%identityAlignment
A0A5C7IR28 Retrotrans_gag domain-containing protein4.8e-2148.15Show/hide
Query:  AKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLKEFVGQDREKR---PSPTEQGKGGNN
        +KY  Y +L A+ +Q+LAA+ +T LL +PE LR DP RRN+ KYC FHGD  HTT EC  L+D IETLIR GYLKEF+   +E R   P  TE+     +
Subjt:  AKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLKEFVGQDREKR---PSPTEQGKGGNN

Query:  PPLE--------IRTILGGCS-GGESSRKRKAAFR
        PP          + TI GG +  G+S+R RKA  R
Subjt:  PPLE--------IRTILGGCS-GGESSRKRKAAFR

A0A6J1CNT2 uncharacterized protein LOC1110128059.7e-2238.89Show/hide
Query:  KKPESVRHEEEHLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDEIETLI
        K+ +  R       +  + E ++   + +P  K+ +YTS T  L+QVL  I++  LLK PER+ +   +R++ +YC+FH DH H TQ+C  L++E+E LI
Subjt:  KKPESVRHEEEHLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDEIETLI

Query:  REGYLKEFVGQDREKRPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRRALEER
          GYLKE+V     + P  T+ G+   +P  EIRTI+GG    ES RKRK   R  RA  E+
Subjt:  REGYLKEFVGQDREKRPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRRALEER

A0A6J1DWY0 uncharacterized protein LOC1110252938.8e-2331.64Show/hide
Query:  CSHKRVAAFSILLARKGELIKAFYKSKFSMKSLITRINLVDLFSMFIAYVRLQAQETEIAEIKGRMNEMGQNLTEILSLLKKPESV--RHEEEHLRRDPK
        C  + VA    +  R  E ++  Y ++F+ + L     L D  S+      ++ +    +  K   N   + L+     +   E    + E +  R DPK
Subjt:  CSHKRVAAFSILLARKGELIKAFYKSKFSMKSLITRINLVDLFSMFIAYVRLQAQETEIAEIKGRMNEMGQNLTEILSLLKKPESV--RHEEEHLRRDPK

Query:  K------------EAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLK
        +            E ++   + +P  K+ +YT  T  ++QVL  I+D  LLK PER+++   +R++ +YC+FH DH H TQ+C  L++E+E LIR GYLK
Subjt:  K------------EAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLK

Query:  EFVGQDREKRPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRRALEER
        E+V     + P  T+ G+   +P  EIRTI+GG    ES RKRKA  R  R   E+
Subjt:  EFVGQDREKRPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRRALEER

A0A6J1DYL6 uncharacterized protein LOC1110257851.7e-2138.32Show/hide
Query:  KKPESVRHEEEHLRRDPKK-----EAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDE
        ++P+  R +++  R   K      E ++   + +P  K+ +YT  T  L+QVL  I+D  LLK PER++    +R++ +YC+FH DH+H TQ+   L++E
Subjt:  KKPESVRHEEEHLRRDPKK-----EAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDE

Query:  IETLIREGYLKEFVGQDREKRPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRRALEER
        +E LIR GYL+E+V     + P  T+ G+   +P  EIRTI+GG    ES+RKRKA  R  R   E+
Subjt:  IETLIREGYLKEFVGQDREKRPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRRALEER

A0A6J1DZ52 uncharacterized protein LOC1110256128.2e-2139.05Show/hide
Query:  EILSLLKKPESVRHEEEHLRRDPK------KEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQE
        E   L K+ E  R +++  R   K      ++   + G+ +   K+ +YT  T  L+QVL  I+D  LLK PE +++ P++R++ +YC+FH DH H T +
Subjt:  EILSLLKKPESVRHEEEHLRRDPK------KEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQE

Query:  CIQLRDEIETLIREGYLKEFVGQDREKRPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRR
        C  L++E+E LIR+GYLKE+V  D +  P+     K   +P  EIRTI+GG +  ES RKRKA+ R  R
Subjt:  CIQLRDEIETLIREGYLKEFVGQDREKRPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACTAACTTGGTTAATGAGTTTAAGCCGATTAGTCTCGTATCGTTAGAGCTTCTGATCTCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTTTTCAATCTT
ATTGGCAAGAAAAGGCGAATTGATCAAGGCTTTCTACAAAAGTAAGTTTTCTATGAAATCCTTGATCACTAGGATCAATCTAGTTGATCTTTTTAGCATGTTTATAGCCT
ATGTTCGACTCCAAGCCCAAGAGACCGAGATCGCAGAGATTAAGGGGAGGATGAACGAGATGGGGCAGAACTTAACTGAAATCCTTAGTCTATTGAAGAAGCCCGAGTCC
GTCAGGCACGAGGAAGAGCATCTACGCAGAGACCCCAAGAAGGAGGCCAAGGAGCTGCAGGGCCGCGCAGAGCCAAAAGCCAAGTATAACAGGTATACGTCGCTAACAGC
TTCACTTGATCAGGTCTTGGCCGCAATACAGGATACCAATCTGTTGAAACGTCCAGAAAGGCTGAGATCAGACCCAGACAGGAGAAACAGGAACAAATACTGCATGTTCC
ATGGAGACCACGACCACACAACCCAGGAATGCATACAGCTAAGGGATGAAATAGAAACCCTAATTCGAGAGGGCTACCTCAAGGAATTCGTAGGACAGGACAGAGAAAAG
AGACCTTCGCCAACAGAACAGGGTAAGGGAGGCAACAACCCACCGTTAGAGATACGAACCATCCTCGGAGGATGTTCAGGGGGAGAGTCAAGTAGGAAGCGAAAAGCTGC
ATTTCGTTTCAGAAGAGCACTTGAAGAGAGGCCCGGGAACTTCCTAGGTCTCCCCAAGTTTCCCCAGAAAAGTGTACACACCCCTGGGATGAACACAACACTTGAAGAGA
GGTTGACGCATGCCCTCAACCTCCCCAAGTCTCCAACTGAGTGCAGGCACCCTTGGGATGGAAAACAAGCAAGCAAACAACGCAGAGGAGCTGGTCGGCCTCATGCCAAG
GCCGAGGCCGACCATCCAGAGGCCAAGGCCGAGCTCCACCCTCAAAGGCCCAGGATTACGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGACTAACTTGGTTAATGAGTTTAAGCCGATTAGTCTCGTATCGTTAGAGCTTCTGATCTCCGATTGGTGGTGTTCGCACAAGAGGGTTGCTGCGTTTTCAATCTT
ATTGGCAAGAAAAGGCGAATTGATCAAGGCTTTCTACAAAAGTAAGTTTTCTATGAAATCCTTGATCACTAGGATCAATCTAGTTGATCTTTTTAGCATGTTTATAGCCT
ATGTTCGACTCCAAGCCCAAGAGACCGAGATCGCAGAGATTAAGGGGAGGATGAACGAGATGGGGCAGAACTTAACTGAAATCCTTAGTCTATTGAAGAAGCCCGAGTCC
GTCAGGCACGAGGAAGAGCATCTACGCAGAGACCCCAAGAAGGAGGCCAAGGAGCTGCAGGGCCGCGCAGAGCCAAAAGCCAAGTATAACAGGTATACGTCGCTAACAGC
TTCACTTGATCAGGTCTTGGCCGCAATACAGGATACCAATCTGTTGAAACGTCCAGAAAGGCTGAGATCAGACCCAGACAGGAGAAACAGGAACAAATACTGCATGTTCC
ATGGAGACCACGACCACACAACCCAGGAATGCATACAGCTAAGGGATGAAATAGAAACCCTAATTCGAGAGGGCTACCTCAAGGAATTCGTAGGACAGGACAGAGAAAAG
AGACCTTCGCCAACAGAACAGGGTAAGGGAGGCAACAACCCACCGTTAGAGATACGAACCATCCTCGGAGGATGTTCAGGGGGAGAGTCAAGTAGGAAGCGAAAAGCTGC
ATTTCGTTTCAGAAGAGCACTTGAAGAGAGGCCCGGGAACTTCCTAGGTCTCCCCAAGTTTCCCCAGAAAAGTGTACACACCCCTGGGATGAACACAACACTTGAAGAGA
GGTTGACGCATGCCCTCAACCTCCCCAAGTCTCCAACTGAGTGCAGGCACCCTTGGGATGGAAAACAAGCAAGCAAACAACGCAGAGGAGCTGGTCGGCCTCATGCCAAG
GCCGAGGCCGACCATCCAGAGGCCAAGGCCGAGCTCCACCCTCAAAGGCCCAGGATTACGTTATGA
Protein sequenceShow/hide protein sequence
METNLVNEFKPISLVSLELLISDWWCSHKRVAAFSILLARKGELIKAFYKSKFSMKSLITRINLVDLFSMFIAYVRLQAQETEIAEIKGRMNEMGQNLTEILSLLKKPES
VRHEEEHLRRDPKKEAKELQGRAEPKAKYNRYTSLTASLDQVLAAIQDTNLLKRPERLRSDPDRRNRNKYCMFHGDHDHTTQECIQLRDEIETLIREGYLKEFVGQDREK
RPSPTEQGKGGNNPPLEIRTILGGCSGGESSRKRKAAFRFRRALEERPGNFLGLPKFPQKSVHTPGMNTTLEERLTHALNLPKSPTECRHPWDGKQASKQRRGAGRPHAK
AEADHPEAKAELHPQRPRITL