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Spg034335 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034335
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S30
Genome locationscaffold12:21241807..21242317
RNA-Seq ExpressionSpg034335
SyntenySpg034335
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006846 - Ribosomal protein S30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI35991.3 unnamed protein product, partial [Vitis vinifera]1.6e-1065.22Show/hide
Query:  HQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        H H Q   GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  HQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

EXB24685.1 40S ribosomal protein S30 [Morus notabilis]6.1e-1063.38Show/hide
Query:  QPHQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        QP    + A GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  QPHQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

KAF7086710.1 hypothetical protein CFC21_089977 [Triticum aestivum]6.1e-1085.42Show/hide
Query:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR---VVGFDKKGGPNSSEK
        GKVHGSLA AGKVRGQTPKVAKQDKKK+PR   VVGF KK GPNSSEK
Subjt:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR---VVGFDKKGGPNSSEK

PIA42862.1 hypothetical protein AQUCO_02000366v1, partial [Aquilegia coerulea]3.6e-1066.67Show/hide
Query:  HQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        H  A GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  HQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

TVU12357.1 hypothetical protein EJB05_45998, partial [Eragrostis curvula]5.5e-1155.32Show/hide
Query:  PLSPSSR--------SPSRLLLDQPHQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        PL P +R        +PS     QP +H   A GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  PLSPSSR--------SPSRLLLDQPHQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

TrEMBL top hitse value%identityAlignment
A0A2G5DHA6 40S ribosomal protein S30 (Fragment)1.7e-1066.67Show/hide
Query:  HQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        H  A GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  HQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

A0A341X679 40S ribosomal protein S302.9e-1085.42Show/hide
Query:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR---VVGFDKKGGPNSSEK
        GKVHGSLA AGKVRGQTPKVAKQDKKK+PR   VVGF KK GPNSSEK
Subjt:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR---VVGFDKKGGPNSSEK

A0A5J9TMD4 40S ribosomal protein S30 (Fragment)2.7e-1155.32Show/hide
Query:  PLSPSSR--------SPSRLLLDQPHQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        PL P +R        +PS     QP +H   A GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  PLSPSSR--------SPSRLLLDQPHQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

K3YYK8 40S ribosomal protein S302.0e-1159.77Show/hide
Query:  SPSSRSPSRLLLDQPHQHHQVAA---GKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        SPSS SP +     P  H   AA   GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  SPSSRSPSRLLLDQPHQHHQVAA---GKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

W9QWZ6 40S ribosomal protein S302.9e-1063.38Show/hide
Query:  QPHQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        QP    + A GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  QPHQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

SwissProt top hitse value%identityAlignment
P49689 40S ribosomal protein S308.8e-1268.85Show/hide
Query:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

P62860 40S ribosomal protein S309.4e-0655.17Show/hide
Query:  KVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSS
        KVHGSLA AGKVRGQTPKVAKQ+KKKK                  V  F KK GPN++
Subjt:  KVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSS

P62861 40S ribosomal protein S309.4e-0655.17Show/hide
Query:  KVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSS
        KVHGSLA AGKVRGQTPKVAKQ+KKKK                  V  F KK GPN++
Subjt:  KVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSS

P62862 40S ribosomal protein S309.4e-0655.17Show/hide
Query:  KVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSS
        KVHGSLA AGKVRGQTPKVAKQ+KKKK                  V  F KK GPN++
Subjt:  KVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSS

P62866 40S ribosomal protein S309.4e-0655.17Show/hide
Query:  KVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSS
        KVHGSLA AGKVRGQTPKVAKQ+KKKK                  V  F KK GPN++
Subjt:  KVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSS

Arabidopsis top hitse value%identityAlignment
AT2G19750.1 Ribosomal protein S30 family protein6.3e-1368.85Show/hide
Query:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

AT4G29390.1 Ribosomal protein S30 family protein6.3e-1368.85Show/hide
Query:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK

AT5G56670.1 Ribosomal protein S30 family protein6.3e-1368.85Show/hide
Query:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK
        GKVHGSLA AGKVRGQTPKVAKQDKKKKPR                VVGF KK GPNSSEK
Subjt:  GKVHGSLACAGKVRGQTPKVAKQDKKKKPR----------------VVGFDKKGGPNSSEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCTTTCCCCTTCCTCTCGATCTCCCTCTCGTCTTCTCCTAGATCAACCGCACCAGCACCACCAAGTCGCCGCAGGTAAGGTTCACGGATCTTTGGCTTGTGCCGG
TAAGGTGAGAGGCCAGACACCAAAAGTTGCTAAACAGGACAAGAAGAAGAAGCCACGAGTTGTTGGATTTGACAAGAAGGGAGGACCAAACTCGTCCGAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCTTTCCCCTTCCTCTCGATCTCCCTCTCGTCTTCTCCTAGATCAACCGCACCAGCACCACCAAGTCGCCGCAGGTAAGGTTCACGGATCTTTGGCTTGTGCCGG
TAAGGTGAGAGGCCAGACACCAAAAGTTGCTAAACAGGACAAGAAGAAGAAGCCACGAGTTGTTGGATTTGACAAGAAGGGAGGACCAAACTCGTCCGAGAAGTAA
Protein sequenceShow/hide protein sequence
MPLSPSSRSPSRLLLDQPHQHHQVAAGKVHGSLACAGKVRGQTPKVAKQDKKKKPRVVGFDKKGGPNSSEK