; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034342 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034342
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionZinc finger, CCHC-type
Genome locationscaffold12:21250305..21251197
RNA-Seq ExpressionSpg034342
SyntenySpg034342
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065903.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-0432.73Show/hide
Query:  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTM
        ++G +++    E     + +E E  A        E  W ++ I++N E IIM Q  MT++RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  M
Subjt:  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTM

Query:  NLKIQIHSHI
        NL+I+IHSH+
Subjt:  NLKIQIHSHI
TYK15114.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]4.6e-0432.73Show/hide
Query:  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTM
        ++G +++    E     + +E E  A        E  W ++ I++N E IIM Q  MT++RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  M
Subjt:  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTM

Query:  NLKIQIHSHI
        NL+I+IHSH+
Subjt:  NLKIQIHSHI
TrEMBL top hitse value%identityAlignment
A0A5A7VCL9 Reverse transcriptase2.2e-0432.73Show/hide
Query:  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTM
        ++G +++    E     + +E E  A        E  W ++ I++N E IIM Q  MT++RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  M
Subjt:  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTM

Query:  NLKIQIHSHI
        NL+I+IHSH+
Subjt:  NLKIQIHSHI
A0A5D3CW05 Zinc finger, CCHC-type2.2e-0432.73Show/hide
Query:  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTM
        ++G +++    E     + +E E  A        E  W ++ I++N E IIM Q  MT++RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  M
Subjt:  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTM

Query:  NLKIQIHSHI
        NL+I+IHSH+
Subjt:  NLKIQIHSHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTCCACCAGAGAGTGGGGGCTTAATGTTATGGGTAAAAAATGGCCAAAGACCATTTTGTTCAGAAGGTCCAAAGTTGTCGGGCCTAAATTGGCAGAGAACGACCC
ATTGCAAGCAAGAAAGGGCTGGGGCAATCCCCAGCCCTCCATGCTGGTCCAAAAGATGGTCCAGAAGATTTTTGATTGGGCCATTACCACATGCAATGCATTTTACTTTT
ATAAAATAACGATGAAACGACATGATAAGGGAATAAGCAATCAAGAAGCACAAGAAGAAGAATTGCAAGCTCCATCAGCTCAAGAAGAAGAACTTGAAGCTCCACCAGCT
CAATTAAGCTTGAATGAAGCTCCATGGGTGTCAATGCCAATTGAATCCAATCATGAGGAGATCATTATGCCACAAGCTCCAATGACAAGATCTAGAGCTAAAAGACTACA
AGAGGCATTAAATAGTTACTTCCAAGCTAAAGTGACTATCCATGACCAAGAGTTGCATCCATTCAAGCTTGGAAAGGCACCCATTCAACCAAAAGACACAATGAATCTAA
AAATCCAGATTCATTCACATATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTCCACCAGAGAGTGGGGGCTTAATGTTATGGGTAAAAAATGGCCAAAGACCATTTTGTTCAGAAGGTCCAAAGTTGTCGGGCCTAAATTGGCAGAGAACGACCC
ATTGCAAGCAAGAAAGGGCTGGGGCAATCCCCAGCCCTCCATGCTGGTCCAAAAGATGGTCCAGAAGATTTTTGATTGGGCCATTACCACATGCAATGCATTTTACTTTT
ATAAAATAACGATGAAACGACATGATAAGGGAATAAGCAATCAAGAAGCACAAGAAGAAGAATTGCAAGCTCCATCAGCTCAAGAAGAAGAACTTGAAGCTCCACCAGCT
CAATTAAGCTTGAATGAAGCTCCATGGGTGTCAATGCCAATTGAATCCAATCATGAGGAGATCATTATGCCACAAGCTCCAATGACAAGATCTAGAGCTAAAAGACTACA
AGAGGCATTAAATAGTTACTTCCAAGCTAAAGTGACTATCCATGACCAAGAGTTGCATCCATTCAAGCTTGGAAAGGCACCCATTCAACCAAAAGACACAATGAATCTAA
AAATCCAGATTCATTCACATATTTAA
Protein sequenceShow/hide protein sequence
MVSTREWGLNVMGKKWPKTILFRRSKVVGPKLAENDPLQARKGWGNPQPSMLVQKMVQKIFDWAITTCNAFYFYKITMKRHDKGISNQEAQEEELQAPSAQEEELEAPPA
QLSLNEAPWVSMPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTMNLKIQIHSHI