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Spg034369 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034369
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold12:22656081..22657064
RNA-Seq ExpressionSpg034369
SyntenySpg034369
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581902.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]6.9e-1881.36Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
KAG7018336.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-1881.36Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
XP_022955569.1 pentatricopeptide repeat-containing protein At3g16010 [Cucurbita moschata]6.9e-1881.36Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
XP_023528001.1 pentatricopeptide repeat-containing protein At3g16010 [Cucurbita pepo subsp. pepo]6.9e-1881.36Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
XP_038900614.1 pentatricopeptide repeat-containing protein At3g16010 [Benincasa hispida]6.9e-1881.36Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
TrEMBL top hitse value%identityAlignment
A0A498HHU8 Uncharacterized protein4.3e-1881.36Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
A0A4V6RY92 Uncharacterized protein4.3e-1877.97Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L +ELKENCG SSARV+AVMI+HF KCGCL +A+DLFNEMKKLGCSP+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
A0A6J1GWN2 pentatricopeptide repeat-containing protein At3g160103.3e-1881.36Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
A0A7C9A1B6 Uncharacterized protein4.3e-1871.64Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMS---RMGPLED
        L +EL+ENCG SSARV+AVMI+HF KCGCL DAVDLFNEMKKLGC P+VY  NALMS   R G + D
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMS---RMGPLED
A0A7J7HYV2 Uncharacterized protein4.3e-1877.97Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L +ELKENCG SSARV+AVMI+HF KCGCL +A+DLFNEMKKLGCSP+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
SwissProt top hitse value%identityAlignment
Q9LW84 Pentatricopeptide repeat-containing protein At3g160105.6e-1567.8Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L KELKEN G  S+RV+AVMI+HF KCG L +AVDLFNEMK  G  P+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
Arabidopsis top hitse value%identityAlignment
AT1G06710.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.0e-0433.93Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALM
        L +E+K     +    + +M+  F K G +  A   FNEM+++GC+PNV    AL+
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALM
AT1G73710.1 Pentatricopeptide repeat (PPR) superfamily protein6.0e-0433.33Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMS
        +L E+ ++  +   + +A MI  + + G L DAVDL+  M+K G  PN  V  +L++
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMS
AT3G16010.1 Pentatricopeptide repeat (PPR-like) superfamily protein4.0e-1667.8Show/hide
Query:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM
        L KELKEN G  S+RV+AVMI+HF KCG L +AVDLFNEMK  G  P+VY  NALMS M
Subjt:  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCTTCGCCCCCAGCTCCCCAAAGATTGTCTCCCCCCTCTTCTCCTCCAGTCCCCCCTTTTGGGTCTTGCGACTGAAAGTCCTTTATTGAAAGAATTAAAAGAGAA
TTGTGGACGCTCTAGTGCTCGAGTACATGCTGTGATGATAAGACACTTTAGTAAATGTGGATGCCTCGGTGATGCTGTTGATCTTTTTAATGAAATGAAGAAACTTGGAT
GCAGCCCTAATGTGTATGTGCTTAATGCACTCATGTCAAGGATGGGTCCTCTTGAGGATTTATTGCTGTCAAAACCAACTAACGATTTATCTGGAGGATATTTATCTAGA
GAACTCATGCACCAATTAGCAAGGATGAGCTCTCATGGCAGTATGGAGGATATGCTGAAGGAGAAGATGGAAGACGAAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCTTCGCCCCCAGCTCCCCAAAGATTGTCTCCCCCCTCTTCTCCTCCAGTCCCCCCTTTTGGGTCTTGCGACTGAAAGTCCTTTATTGAAAGAATTAAAAGAGAA
TTGTGGACGCTCTAGTGCTCGAGTACATGCTGTGATGATAAGACACTTTAGTAAATGTGGATGCCTCGGTGATGCTGTTGATCTTTTTAATGAAATGAAGAAACTTGGAT
GCAGCCCTAATGTGTATGTGCTTAATGCACTCATGTCAAGGATGGGTCCTCTTGAGGATTTATTGCTGTCAAAACCAACTAACGATTTATCTGGAGGATATTTATCTAGA
GAACTCATGCACCAATTAGCAAGGATGAGCTCTCATGGCAGTATGGAGGATATGCTGAAGGAGAAGATGGAAGACGAAGAATAG
Protein sequenceShow/hide protein sequence
MTLRPQLPKDCLPPLLLQSPLLGLATESPLLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRMGPLEDLLLSKPTNDLSGGYLSR
ELMHQLARMSSHGSMEDMLKEKMEDEE