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Spg034382 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034382
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold12:22485040..22489828
RNA-Seq ExpressionSpg034382
SyntenySpg034382
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RYQ84950.1 hypothetical protein Ahy_B10g104458 [Arachis hypogaea]1.1e-0864.41Show/hide
Query:  SWNPKGSLPSHQESCLNHKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        SW    SLP    S    K     +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  SWNPKGSLPSHQESCLNHKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

TYK11036.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]9.6e-0880Show/hide
Query:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVW
        K F   +++ DSKFRLILVESRIHRLARYYKKTKKLPPVW
Subjt:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVW

XP_035538702.1 40S ribosomal protein S13-like [Juglans regia]5.6e-0843.48Show/hide
Query:  QLSSQTNELYHVAIVAFCLLSAWASSWNPKGSLPSHQESCLN--------HKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        Q+     + + +A+V     S     W   G  P + E   +        HK      ++ DSKFRLILVESRIHRLARYYKKTKKLP VWK
Subjt:  QLSSQTNELYHVAIVAFCLLSAWASSWNPKGSLPSHQESCLN--------HKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_039002995.1 40S ribosomal protein S13-like isoform X1 [Hibiscus syriacus]4.3e-0867.27Show/hide
Query:  KGSLPSHQESCLNHKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KG  PS     L  + F   +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KGSLPSHQESCLNHKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_039002996.1 40S ribosomal protein S13-like isoform X2 [Hibiscus syriacus]4.3e-0867.27Show/hide
Query:  KGSLPSHQESCLNHKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KG  PS     L  + F   +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KGSLPSHQESCLNHKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

TrEMBL top hitse value%identityAlignment
A0A1U7WXB7 30S ribosomal protein S15, chloroplastic7.9e-0878.05Show/hide
Query:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        K     +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A1U8P375 40S ribosomal protein S13-like7.9e-0878.05Show/hide
Query:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        K     +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A444X5I4 FA_desaturase domain-containing protein5.5e-0964.41Show/hide
Query:  SWNPKGSLPSHQESCLNHKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        SW    SLP    S    K     +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  SWNPKGSLPSHQESCLNHKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A5D3CKS3 40S ribosomal protein S13-like4.7e-0880Show/hide
Query:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVW
        K F   +++ DSKFRLILVESRIHRLARYYKKTKKLPPVW
Subjt:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVW

A0A6P9E773 40S ribosomal protein S13-like2.7e-0843.48Show/hide
Query:  QLSSQTNELYHVAIVAFCLLSAWASSWNPKGSLPSHQESCLN--------HKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        Q+     + + +A+V     S     W   G  P + E   +        HK      ++ DSKFRLILVESRIHRLARYYKKTKKLP VWK
Subjt:  QLSSQTNELYHVAIVAFCLLSAWASSWNPKGSLPSHQESCLN--------HKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S132.8e-1088.57Show/hide
Query:  QENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  QENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-12.2e-1078.05Show/hide
Query:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        K     +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-22.2e-1078.05Show/hide
Query:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        K     +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P62302 40S ribosomal protein S132.2e-1078.05Show/hide
Query:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        K     +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Q69UI2 40S ribosomal protein S13-11.4e-0973.17Show/hide
Query:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        K     +++ DSKFRLILVESRIHRLARYYK+TKKLPP WK
Subjt:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Arabidopsis top hitse value%identityAlignment
AT2G19600.1 K+ efflux antiporter 41.3e-0530.71Show/hide
Query:  LCYRENMFQLSGAKLSEGIFVGSFLSMSSTIVVVKF----------------------------------------------------------------
        +C       L G KL+EGIFVG+FLSMSST VV+KF                                                                
Subjt:  LCYRENMFQLSGAKLSEGIFVGSFLSMSSTIVVVKF----------------------------------------------------------------

Query:  ------------LMMQLSSQTNELYHVAIVAFCLLSAWAS
                    LM  LSSQTNELY +A VAFCLL AW S
Subjt:  ------------LMMQLSSQTNELYHVAIVAFCLLSAWAS

AT3G60770.1 Ribosomal protein S13/S151.5e-1178.05Show/hide
Query:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        K     +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A1.5e-1178.05Show/hide
Query:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        K     +++ DSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK

AT5G51710.1 K+ efflux antiporter 51.0e-0735.11Show/hide
Query:  LSGAKLSEGIFVGSFLSMSSTIVVVKF-------------------------------------------------------------------------
        L GA+LSEGIFVG+FLSMSST VVVKF                                                                         
Subjt:  LSGAKLSEGIFVGSFLSMSSTIVVVKF-------------------------------------------------------------------------

Query:  ---LMMQLSSQTNELYHVAIVAFCLLSAWAS
           LM+QLSSQTNELY +A VAFCLLSAW S
Subjt:  ---LMMQLSSQTNELYHVAIVAFCLLSAWAS

AT5G51710.2 K+ efflux antiporter 51.0e-0735.11Show/hide
Query:  LSGAKLSEGIFVGSFLSMSSTIVVVKF-------------------------------------------------------------------------
        L GA+LSEGIFVG+FLSMSST VVVKF                                                                         
Subjt:  LSGAKLSEGIFVGSFLSMSSTIVVVKF-------------------------------------------------------------------------

Query:  ---LMMQLSSQTNELYHVAIVAFCLLSAWAS
           LM+QLSSQTNELY +A VAFCLLSAW S
Subjt:  ---LMMQLSSQTNELYHVAIVAFCLLSAWAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTCCCCTCCCCTCCGGCGAATAGCTCCGACGACGGCGCAGCAGCAGCGGCGGTTCATCGGCGTCGAGCACTCCTTCGCGCAGTCAACGGCGATTTCTGCGTGGG
TGCTCTATTTAAGCGCGAACAACAGTGTTTTTGGGAGTTTTTAATGGGTTTTATAGCGAATTCGACTGTAGCGATTCAAGCAGTGGGTCTTCGACTTTCAACGTTTTTTA
GCAATTTCGGCATTGGGTTATGTAATCTTTGCTATAGAGAAAATATGTTCCAGTTAAGTGGAGCTAAATTGTCCGAGGGTATATTTGTTGGTTCATTTTTATCAATGTCA
TCGACAATAGTGGTGGTGAAGTTCTTGATGATGCAGTTATCTTCTCAAACAAATGAGTTGTATCACGTTGCTATTGTGGCATTCTGCTTGTTGTCTGCTTGGGCTAGCTC
CTGGAATCCCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTGAATCACAAAGCATTTGCAGAGAAACAGGAAAATAATGATTCCAAGTTCAGGTTGATTTTGGTGG
AGAGTAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTCCCCTCCCCTCCGGCGAATAGCTCCGACGACGGCGCAGCAGCAGCGGCGGTTCATCGGCGTCGAGCACTCCTTCGCGCAGTCAACGGCGATTTCTGCGTGGG
TGCTCTATTTAAGCGCGAACAACAGTGTTTTTGGGAGTTTTTAATGGGTTTTATAGCGAATTCGACTGTAGCGATTCAAGCAGTGGGTCTTCGACTTTCAACGTTTTTTA
GCAATTTCGGCATTGGGTTATGTAATCTTTGCTATAGAGAAAATATGTTCCAGTTAAGTGGAGCTAAATTGTCCGAGGGTATATTTGTTGGTTCATTTTTATCAATGTCA
TCGACAATAGTGGTGGTGAAGTTCTTGATGATGCAGTTATCTTCTCAAACAAATGAGTTGTATCACGTTGCTATTGTGGCATTCTGCTTGTTGTCTGCTTGGGCTAGCTC
CTGGAATCCCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTGAATCACAAAGCATTTGCAGAGAAACAGGAAAATAATGATTCCAAGTTCAGGTTGATTTTGGTGG
AGAGTAGGATCCATCGTCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAG
Protein sequenceShow/hide protein sequence
MCVPSPPANSSDDGAAAAAVHRRRALLRAVNGDFCVGALFKREQQCFWEFLMGFIANSTVAIQAVGLRLSTFFSNFGIGLCNLCYRENMFQLSGAKLSEGIFVGSFLSMS
STIVVVKFLMMQLSSQTNELYHVAIVAFCLLSAWASSWNPKGSLPSHQESCLNHKAFAEKQENNDSKFRLILVESRIHRLARYYKKTKKLPPVWK