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Spg034390 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034390
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpumilio homolog 23
Genome locationscaffold12:22618815..22620311
RNA-Seq ExpressionSpg034390
SyntenySpg034390
Gene Ontology termsGO:0000056 - ribosomal small subunit export from nucleus (biological process)
GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000472 - endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000480 - endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006417 - regulation of translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030686 - 90S preribosome (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001313 - Pumilio RNA-binding repeat


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593586.1 Pumilio-like 23, partial [Cucurbita argyrosperma subsp. sororia]1.2e-0778.26Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
        ME+DH+LEVAKDSSG RVIEAFLNS+AP KLK RLVMK L  HF E
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
KAG7025929.1 Pumilio-like 23, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-0778.26Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
        ME+DH+LEVAKDSSG RVIEAFLNS+AP KLK RLVMK L  HF E
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
XP_022147904.1 pumilio homolog 23 [Momordica charantia]1.2e-0960Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETSRLDRNHWIL--CVVNFNTKNPFTQEQL
        MEADHVLEVAKDSSG RVIEAFLNS+AP KLK RLVMK L  HF E S L  + + +  C   FN+ N   +E +
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETSRLDRNHWIL--CVVNFNTKNPFTQEQL
XP_023000128.1 pumilio homolog 23-like [Cucurbita maxima]1.2e-0778.26Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
        ME+DH+LEVAKDSSG RVIEAFLNS+AP KLK RLVMK L  HF E
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
XP_023513772.1 pumilio homolog 23-like [Cucurbita pepo subsp. pepo]1.2e-0778.26Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
        ME+DH+LEVAKDSSG RVIEAFLNS+AP KLK RLVMK L  HF E
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
TrEMBL top hitse value%identityAlignment
A0A0A0KCB6 Uncharacterized protein1.6e-0772.92Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
        ME  HVLEVAKDSSG RV+EAFLNS+AP KLK RL+MK L  HF E S
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
A0A5D3BYL7 Pumilio-like protein 233.6e-0772.92Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
        ME +HVLEVAKD SG RVIEAFLNS+AP KLK RL+MK L  HF E S
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
A0A6J1D2D9 pumilio homolog 236.0e-1060Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETSRLDRNHWIL--CVVNFNTKNPFTQEQL
        MEADHVLEVAKDSSG RVIEAFLNS+AP KLK RLVMK L  HF E S L  + + +  C   FN+ N   +E +
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETSRLDRNHWIL--CVVNFNTKNPFTQEQL
A0A6J1HKG0 pumilio homolog 23-like2.1e-0776.09Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
        ME++H+LEVAKDSSG RVIEAFLNS+AP KLK RLVMK L  HF E
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
A0A6J1KLR8 pumilio homolog 23-like5.6e-0878.26Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
        ME+DH+LEVAKDSSG RVIEAFLNS+AP KLK RLVMK L  HF E
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEE
SwissProt top hitse value%identityAlignment
Q9C552 Pumilio homolog 232.3e-0660.42Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
        M+A+++ E AKDSSG RVIEAFL S+A TK K RL++K L  HF E S
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
Arabidopsis top hitse value%identityAlignment
AT1G72320.1 pumilio 231.6e-0760.42Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
        M+A+++ E AKDSSG RVIEAFL S+A TK K RL++K L  HF E S
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
AT1G72320.2 pumilio 231.6e-0760.42Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
        M+A+++ E AKDSSG RVIEAFL S+A TK K RL++K L  HF E S
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
AT1G72320.3 pumilio 231.6e-0760.42Show/hide
Query:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS
        M+A+++ E AKDSSG RVIEAFL S+A TK K RL++K L  HF E S
Subjt:  MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCGATCATGTCCTTGAAGTAGCAAAAGACTCCAGTGGAGGACGTGTTATTGAAGCTTTTTTAAATTCTAACGCCCCTACAAAACTGAAGTGCAGATTAGTTAT
GAAGTTCCTTTGGACGCATTTTGAGGAGACTAGTAGACTAGACAGGAATCACTGGATATTGTGTGTTGTGAATTTTAATACTAAGAATCCGTTCACACAAGAACAGCTGG
ACGAGATTATTGGATCAGTTAAAATATTTTGCATTGCAATAGGTATTCAGGATGTGGATTTGAATTATGGCAATAAATATGTTGTAGGTGGTATGAGGAAAGATGTCAGT
TTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCCGATCATGTCCTTGAAGTAGCAAAAGACTCCAGTGGAGGACGTGTTATTGAAGCTTTTTTAAATTCTAACGCCCCTACAAAACTGAAGTGCAGATTAGTTAT
GAAGTTCCTTTGGACGCATTTTGAGGAGACTAGTAGACTAGACAGGAATCACTGGATATTGTGTGTTGTGAATTTTAATACTAAGAATCCGTTCACACAAGAACAGCTGG
ACGAGATTATTGGATCAGTTAAAATATTTTGCATTGCAATAGGTATTCAGGATGTGGATTTGAATTATGGCAATAAATATGTTGTAGGTGGTATGAGGAAAGATGTCAGT
TTATAA
Protein sequenceShow/hide protein sequence
MEADHVLEVAKDSSGGRVIEAFLNSNAPTKLKCRLVMKFLWTHFEETSRLDRNHWILCVVNFNTKNPFTQEQLDEIIGSVKIFCIAIGIQDVDLNYGNKYVVGGMRKDVS
L