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Spg034399 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034399
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold12:22413308..22415528
RNA-Seq ExpressionSpg034399
SyntenySpg034399
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.0e-1562.03Show/hide
Query:  PRGNRSSLQTRKLSKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVSG----------GSMGIVRGE
        PRGNR +L T KL KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+  + +  S           GS GIVRG+
Subjt:  PRGNRSSLQTRKLSKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVSG----------GSMGIVRGE

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.5e-1353.61Show/hide
Query:  PRGNRSSLQTRKLSKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVSGGSMGIVRGE
        PRGNR SLQTR+L KT               V IELPVPD LPTSAESS S+SSTW+ELY ESVH+             ++++FNVS GS GIVRG+
Subjt:  PRGNRSSLQTRKLSKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVSGGSMGIVRGE

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]3.0e-1442.76Show/hide
Query:  KLYLIKGSREPRICVVCIRGISGLIGWESRFPFFR--------------PRGNRSSLQTRKLSKT-----------------VEIELPVPDTLPTSAESS
        KLYLI+  REPRI      G          F F +              PRGNRSSLQT +L KT                 VEIELPVPDTLPTSAES 
Subjt:  KLYLIKGSREPRICVVCIRGISGLIGWESRFPFFR--------------PRGNRSSLQTRKLSKT-----------------VEIELPVPDTLPTSAESS

Query:  RSSSSTWVELYIESVHIVNVLFNVSG----------GSMGIVRGE
         S+SSTW+ELY E VH+  + +  S           GS GIVRG+
Subjt:  RSSSSTWVELYIESVHIVNVLFNVSG----------GSMGIVRGE

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]6.6e-1471.43Show/hide
Query:  LIGWESRFPFFRPRGNRSSLQTRKLSKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        LI + + F    PRGNR S QT KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+
Subjt:  LIGWESRFPFFRPRGNRSSLQTRKLSKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.5e-1352Show/hide
Query:  FFRPRGNRSSLQTRKLSKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVSGGSMGIVRGE
        +  PRGNR SLQT +L KTV                IELPVPDTLPTSAESS S+SSTW+ELY ESVH+             ++++FNVS GS GIVRG+
Subjt:  FFRPRGNRSSLQTRKLSKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVSGGSMGIVRGE

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein9.9e-1662.03Show/hide
Query:  PRGNRSSLQTRKLSKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVSG----------GSMGIVRGE
        PRGNR +L T KL KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+  + +  S           GS GIVRG+
Subjt:  PRGNRSSLQTRKLSKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLFNVSG----------GSMGIVRGE

A0A5A7UT17 CCHC-type domain-containing protein7.1e-1453.61Show/hide
Query:  PRGNRSSLQTRKLSKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVSGGSMGIVRGE
        PRGNR SLQTR+L KT               V IELPVPD LPTSAESS S+SSTW+ELY ESVH+             ++++FNVS GS GIVRG+
Subjt:  PRGNRSSLQTRKLSKT---------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVSGGSMGIVRGE

A0A5A7VIY9 Uncharacterized protein1.4e-1442.76Show/hide
Query:  KLYLIKGSREPRICVVCIRGISGLIGWESRFPFFR--------------PRGNRSSLQTRKLSKT-----------------VEIELPVPDTLPTSAESS
        KLYLI+  REPRI      G          F F +              PRGNRSSLQT +L KT                 VEIELPVPDTLPTSAES 
Subjt:  KLYLIKGSREPRICVVCIRGISGLIGWESRFPFFR--------------PRGNRSSLQTRKLSKT-----------------VEIELPVPDTLPTSAESS

Query:  RSSSSTWVELYIESVHIVNVLFNVSG----------GSMGIVRGE
         S+SSTW+ELY E VH+  + +  S           GS GIVRG+
Subjt:  RSSSSTWVELYIESVHIVNVLFNVSG----------GSMGIVRGE

A0A5D3BET3 Uncharacterized protein3.2e-1471.43Show/hide
Query:  LIGWESRFPFFRPRGNRSSLQTRKLSKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI
        LI + + F    PRGNR S QT KL KTVEIELPVPDTLPTSAESS S+SSTW+ELY ESVH+
Subjt:  LIGWESRFPFFRPRGNRSSLQTRKLSKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI

A0A5D3CJX3 CCHC-type domain-containing protein7.1e-1452Show/hide
Query:  FFRPRGNRSSLQTRKLSKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVSGGSMGIVRGE
        +  PRGNR SLQT +L KTV                IELPVPDTLPTSAESS S+SSTW+ELY ESVH+             ++++FNVS GS GIVRG+
Subjt:  FFRPRGNRSSLQTRKLSKTV---------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLFNVSGGSMGIVRGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGAACTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAAAGCT
CTATTTGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGCATTCGGGGCATTTCTGGACTAATCGGTTGGGAATCGCGTTTTCCTTTCTTCAGGCCAAGAGGAA
ATAGGTCGAGTCTACAGACTAGGAAACTATCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACG
TGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGAACGATGTCCATTGGCTTCACGCCA
TCTTCCGGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGAACTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAAAGCT
CTATTTGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGCATTCGGGGCATTTCTGGACTAATCGGTTGGGAATCGCGTTTTCCTTTCTTCAGGCCAAGAGGAA
ATAGGTCGAGTCTACAGACTAGGAAACTATCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACG
TGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGAACGATGTCCATTGGCTTCACGCCA
TCTTCCGGACTAA
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEELWFSLVFRAFWGVQVESKLYLIKGSREPRICVVCIRGISGLIGWESRFPFFRPRGNRSSLQTRKLSKTVEIELPVPDTLPTSAESSRSSSST
WVELYIESVHIVNVLFNVSGGSMGIVRGERCPLASRHLPD