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Spg034406 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034406
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold12:22596729..22599225
RNA-Seq ExpressionSpg034406
SyntenySpg034406
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.6e-2758.45Show/hide
Query:  TVNLWFFVRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSS----------------YFPNQVMS
        TVNLW FV F L       RPRGNR+SLQTGELDKT                 VEIELPVPDTLP SAESS ++SS                YF NQVMS
Subjt:  TVNLWFFVRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSS----------------YFPNQVMS

Query:  GLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGG
        GLH V    FNVSVG T IVRGD+VCWLHAVF AK AGGPGG
Subjt:  GLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]8.6e-2949.22Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFVRFELHRRNQEVRPRGNRSSLQTGELDKT
        TKPTTD  IFQ NFI FLHHF  KLSE+ +ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLW FV   L      +RPRGNR SLQTG+LDKT
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFVRFELHRRNQEVRPRGNRSSLQTGELDKT

Query:  ----------------------------VEIELPVPDTLPASAESSRTSSS----------------YFPNQVMSGLHHVYVERFNVSVGPTG
                                    VEIELP+PDTLP  AES  ++SS                Y  NQVMSGLH V    FN+SVGPTG
Subjt:  ----------------------------VEIELPVPDTLPASAESSRTSSS----------------YFPNQVMSGLHHVYVERFNVSVGPTG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-2566.36Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSSYFPNQVMSGLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAK
        +PRGN+ SLQTGELDKT                 VEIEL VPDTLP SAES  ++SSYF NQVMSGLH V    FNVSVG TGIVRGDDVC LH VFRAK
Subjt:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSSYFPNQVMSGLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGG
         AGGPGG
Subjt:  LAGGPGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.7e-3239.5Show/hide
Query:  IFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFVRFELHRRNQ-EVRP
        +FQPNFISFLHHFP KLSEH  ERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +   E  +  + +V P
Subjt:  IFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFVRFELHRRNQ-EVRP

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP
        RGNRSSLQTG+LDK                                                                               ++EIEL 
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP

Query:  VPDTLPASAESSRTSSS----------YFPNQVMSGLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGGDFVV
        VPDTLP SAESS ++SS          Y P+ V +        R    V   GIVR +DVCWLHAVFRAK+AGG GG   V
Subjt:  VPDTLPASAESSRTSSS----------YFPNQVMSGLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGGDFVV

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.2e-2457.58Show/hide
Query:  ELHRRNQE--VRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPASAESSRTSSS----------------YFPNQVMSGLHHVYVERF
        E+H+ NQ+  + PRGNR SLQTGELDKTV                IELPVPDTLP SAESS ++SS                 F NQVMS LH V    F
Subjt:  ELHRRNQE--VRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPASAESSRTSSS----------------YFPNQVMSGLHHVYVERF

Query:  NVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGG
        NVSVG TGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  NVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.8e-2758.45Show/hide
Query:  TVNLWFFVRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSS----------------YFPNQVMS
        TVNLW FV F L       RPRGNR+SLQTGELDKT                 VEIELPVPDTLP SAESS ++SS                YF NQVMS
Subjt:  TVNLWFFVRFELHRRNQEVRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSS----------------YFPNQVMS

Query:  GLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGG
        GLH V    FNVSVG T IVRGD+VCWLHAVF AK AGGPGG
Subjt:  GLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7UGD0 Uncharacterized protein4.2e-2949.22Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFVRFELHRRNQEVRPRGNRSSLQTGELDKT
        TKPTTD  IFQ NFI FLHHF  KLSE+ +ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLW FV   L      +RPRGNR SLQTG+LDKT
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFVRFELHRRNQEVRPRGNRSSLQTGELDKT

Query:  ----------------------------VEIELPVPDTLPASAESSRTSSS----------------YFPNQVMSGLHHVYVERFNVSVGPTG
                                    VEIELP+PDTLP  AES  ++SS                Y  NQVMSGLH V    FN+SVGPTG
Subjt:  ----------------------------VEIELPVPDTLPASAESSRTSSS----------------YFPNQVMSGLHHVYVERFNVSVGPTG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein9.6e-2666.36Show/hide
Query:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSSYFPNQVMSGLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAK
        +PRGN+ SLQTGELDKT                 VEIEL VPDTLP SAES  ++SSYF NQVMSGLH V    FNVSVG TGIVRGDDVC LH VFRAK
Subjt:  RPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPASAESSRTSSSYFPNQVMSGLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGG
         AGGPGG
Subjt:  LAGGPGG

A0A5D3CAC6 Uncharacterized protein8.1e-3339.5Show/hide
Query:  IFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFVRFELHRRNQ-EVRP
        +FQPNFISFLHHFP KLSEH  ERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +   E  +  + +V P
Subjt:  IFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFVRFELHRRNQ-EVRP

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP
        RGNRSSLQTG+LDK                                                                               ++EIEL 
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP

Query:  VPDTLPASAESSRTSSS----------YFPNQVMSGLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGGDFVV
        VPDTLP SAESS ++SS          Y P+ V +        R    V   GIVR +DVCWLHAVFRAK+AGG GG   V
Subjt:  VPDTLPASAESSRTSSS----------YFPNQVMSGLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGGDFVV

A0A5D3CJX3 CCHC-type domain-containing protein1.1e-2457.58Show/hide
Query:  ELHRRNQE--VRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPASAESSRTSSS----------------YFPNQVMSGLHHVYVERF
        E+H+ NQ+  + PRGNR SLQTGELDKTV                IELPVPDTLP SAESS ++SS                 F NQVMS LH V    F
Subjt:  ELHRRNQE--VRPRGNRSSLQTGELDKTV---------------EIELPVPDTLPASAESSRTSSS----------------YFPNQVMSGLHHVYVERF

Query:  NVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGG
        NVSVG TGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  NVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTGAGGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTGTTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTC
AGTAGGGCCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGATTTTGTTGTGGATGGAGATG
GAGTGTCTGTCCTGATGACCTTTGTATTTGGTCGGTCGGTTTCATGGAGCATCTCAAAATCACCGACTACCGACCGACCGGAACCGATAGGTCGGTTATCGGTGTCGGTT
TTTGCCCAAAATGGACACCGATCGACCGATGAACAGCCCTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTGAGGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTGTTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTC
AGTAGGGCCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGAGCTAAGCTAGCAGGTGGTCCGGGAGGGGATTTTGTTGTGGATGGAGATG
GAGTGTCTGTCCTGATGACCTTTGTATTTGGTCGGTCGGTTTCATGGAGCATCTCAAAATCACCGACTACCGACCGACCGGAACCGATAGGTCGGTTATCGGTGTCGGTT
TTTGCCCAAAATGGACACCGATCGACCGATGAACAGCCCTATTAA
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFVRFELHRRNQEVRPRGNRSSLQTGELDKTVEIELPV
PDTLPASAESSRTSSSYFPNQVMSGLHHVYVERFNVSVGPTGIVRGDDVCWLHAVFRAKLAGGPGGDFVVDGDGVSVLMTFVFGRSVSWSISKSPTTDRPEPIGRLSVSV
FAQNGHRSTDEQPY