; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034412 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034412
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold12:23394262..23396270
RNA-Seq ExpressionSpg034412
SyntenySpg034412
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037472.1 U-box domain-containing protein 40 [Cucumis melo var. makuwa]3.5e-2882.5Show/hide
Query:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA
        GLK T LDGSKPDFSSVIPNLALKST FNWCKNSSSEPP+PLDFSSAEKL  KF+A H KSD+ELI+ VA+ PVVRFNHA
Subjt:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA

KAG6602455.1 U-box domain-containing protein 40, partial [Cucurbita argyrosperma subsp. sororia]7.0e-2983.75Show/hide
Query:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA
        G K T LDGSKPDF+SVIPNLALKST FNWC+NSSSEPPKPLDFSSAEKL  KFMA HRKSDDELI+ VA+NPVVRFNH+
Subjt:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA

XP_022962017.1 U-box domain-containing protein 40-like [Cucurbita moschata]7.0e-2983.75Show/hide
Query:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA
        G K T LDGSKPDF+SVIPNLALKST FNWC+NSSSEPPKPLDFSSAEKL  KFMA HRKSDDELI+ VA+NPVVRFNH+
Subjt:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA

XP_023542352.1 U-box domain-containing protein 40-like [Cucurbita pepo subsp. pepo]1.2e-2884.81Show/hide
Query:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNH
        G K T LDGSKPDF+SVIPNLALKST FNWCKNSSSEPPKPLDFSSAEKL  KFMA HRKSD+ELI+ VA+NPVVRFNH
Subjt:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNH

XP_038889155.1 U-box domain-containing protein 40 [Benincasa hispida]1.6e-2882.5Show/hide
Query:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA
        GL  T LDGSKPDFSSVIPNLALKS  FNWCKNSSSEPPKPLDFSSAEKL  KFMA H KSD+ELI+ +A+NPVVRFNHA
Subjt:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA

TrEMBL top hitse value%identityAlignment
A0A0A0KX66 RING-type E3 ubiquitin transferase3.8e-2881.25Show/hide
Query:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA
        G+K T LDGSKPDFSSVIPNLALKST FNWCKNSSSEPP+PLDFSSAEKL  KF+A H KSD+ELI+ VA+ PVVRFNHA
Subjt:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA

A0A1S3C8I3 RING-type E3 ubiquitin transferase1.7e-2882.5Show/hide
Query:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA
        GLK T LDGSKPDFSSVIPNLALKST FNWCKNSSSEPP+PLDFSSAEKL  KF+A H KSD+ELI+ VA+ PVVRFNHA
Subjt:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA

A0A5A7T1Z7 RING-type E3 ubiquitin transferase1.7e-2882.5Show/hide
Query:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA
        GLK T LDGSKPDFSSVIPNLALKST FNWCKNSSSEPP+PLDFSSAEKL  KF+A H KSD+ELI+ VA+ PVVRFNHA
Subjt:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA

A0A6J1HBL9 RING-type E3 ubiquitin transferase3.4e-2983.75Show/hide
Query:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA
        G K T LDGSKPDF+SVIPNLALKST FNWC+NSSSEPPKPLDFSSAEKL  KFMA HRKSDDELI+ VA+NPVVRFNH+
Subjt:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNHA

A0A6J1JGY7 RING-type E3 ubiquitin transferase2.9e-2883.54Show/hide
Query:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNH
        G K T LDGSKPDF+SVIPNLALKST FNWCKNSSS+PPKPLDFSSAEKL  KFMA HRKSDDELI+ VA+NPVVR NH
Subjt:  GLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELIERVAKNPVVRFNH

SwissProt top hitse value%identityAlignment
Q0WUF6 U-box domain-containing protein 415.1e-0652.38Show/hide
Query:  LDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAE
        LDG++PD S+VIPNLA+KST F+WC     + P+P D +  E
Subjt:  LDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAE

Q9FJP6 U-box domain-containing protein 381.5e-0537.33Show/hide
Query:  SKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM----AVHRKSDDELIERVAKNPVVRFNHA
        S PDFS++IPNL +KST   WC       P+P D+S+ E++  + M       R S+ EL+  VA    +  +HA
Subjt:  SKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM----AVHRKSDDELIERVAKNPVVRFNHA

Q9FL17 U-box domain-containing protein 406.9e-1150.67Show/hide
Query:  PDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM---AVHRK---SDDELIERVAKNPVVRFNHA
        PDFS+VIPNLALKS   +WC+     PPKPL+ ++AEKL L  M      RK   S+ ELI+ +   P VR NHA
Subjt:  PDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM---AVHRK---SDDELIERVAKNPVVRFNHA

Q9STT1 U-box domain-containing protein 396.0e-0739.44Show/hide
Query:  DGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM------AVHRKSDDELIERVAKN
        DG++PD S+VIPNLA+KST  +WC  +  E P+P D++  E +    M      + HR +  E++  VA+N
Subjt:  DGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM------AVHRKSDDELIERVAKN

Arabidopsis top hitse value%identityAlignment
AT3G47820.1 PLANT U-BOX 394.3e-0839.44Show/hide
Query:  DGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM------AVHRKSDDELIERVAKN
        DG++PD S+VIPNLA+KST  +WC  +  E P+P D++  E +    M      + HR +  E++  VA+N
Subjt:  DGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM------AVHRKSDDELIERVAKN

AT5G40140.1 RING/U-box superfamily protein with ARM repeat domain4.9e-1250.67Show/hide
Query:  PDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM---AVHRK---SDDELIERVAKNPVVRFNHA
        PDFS+VIPNLALKS   +WC+     PPKPL+ ++AEKL L  M      RK   S+ ELI+ +   P VR NHA
Subjt:  PDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM---AVHRK---SDDELIERVAKNPVVRFNHA

AT5G62560.1 RING/U-box superfamily protein with ARM repeat domain3.6e-0752.38Show/hide
Query:  LDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAE
        LDG++PD S+VIPNLA+KST F+WC     + P+P D +  E
Subjt:  LDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAE

AT5G65200.1 plant U-box 381.1e-0637.33Show/hide
Query:  SKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM----AVHRKSDDELIERVAKNPVVRFNHA
        S PDFS++IPNL +KST   WC       P+P D+S+ E++  + M       R S+ EL+  VA    +  +HA
Subjt:  SKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFM----AVHRKSDDELIERVAKNPVVRFNHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGGAAGGCAAAAATGAAATTCGACCGCATTTCTGGAAAAATCTGAAGCCGTTCCGAGTCGCGCGCAGGGTTATAGGTTGCAATCGTGAATTATCTATGTCGAAGTC
GAGTCACAGAAATGTGCATAACGGGTTGAAGTCGACTTCATTAGATGGTTCGAAGCCGGATTTCTCCTCTGTAATCCCGAATCTGGCTCTGAAATCCACCACTTTCAATT
GGTGTAAGAACTCCTCTTCTGAACCCCCGAAACCCCTCGATTTCTCCTCTGCCGAAAAGCTCGCTCTTAAATTCATGGCGGTTCACCGCAAAAGCGATGATGAATTGATT
GAAAGGGTTGCAAAGAATCCTGTGGTTCGATTCAACCACGCCGTACCGAGGTCACTCGTTGGAAATCTCATTTCCACTCGAGCTCCGATGAATCTGTCGCCGCCGTTCTG
A
mRNA sequenceShow/hide mRNA sequence
ATGCGGGAAGGCAAAAATGAAATTCGACCGCATTTCTGGAAAAATCTGAAGCCGTTCCGAGTCGCGCGCAGGGTTATAGGTTGCAATCGTGAATTATCTATGTCGAAGTC
GAGTCACAGAAATGTGCATAACGGGTTGAAGTCGACTTCATTAGATGGTTCGAAGCCGGATTTCTCCTCTGTAATCCCGAATCTGGCTCTGAAATCCACCACTTTCAATT
GGTGTAAGAACTCCTCTTCTGAACCCCCGAAACCCCTCGATTTCTCCTCTGCCGAAAAGCTCGCTCTTAAATTCATGGCGGTTCACCGCAAAAGCGATGATGAATTGATT
GAAAGGGTTGCAAAGAATCCTGTGGTTCGATTCAACCACGCCGTACCGAGGTCACTCGTTGGAAATCTCATTTCCACTCGAGCTCCGATGAATCTGTCGCCGCCGTTCTG
A
Protein sequenceShow/hide protein sequence
MREGKNEIRPHFWKNLKPFRVARRVIGCNRELSMSKSSHRNVHNGLKSTSLDGSKPDFSSVIPNLALKSTTFNWCKNSSSEPPKPLDFSSAEKLALKFMAVHRKSDDELI
ERVAKNPVVRFNHAVPRSLVGNLISTRAPMNLSPPF