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Spg034435 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034435
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:12807053..12809015
RNA-Seq ExpressionSpg034435
SyntenySpg034435
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]7.4e-1370.18Show/hide
Query:  RPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLF
        RP GNR SLQTG+LDKTVEIELP+PDTLPT AES  ++SSTW+ELY ESVH+  + +
Subjt:  RPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLF

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.9e-1378.43Show/hide
Query:  PTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        P GNR +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+
Subjt:  PTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]2.3e-1455.29Show/hide
Query:  AIMGKSVGNLIFISSAWKDKAIYGSNARFGLFDRPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        AI+ + V NL+FISS           +     + P GNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+++SSTW+ELY ESVH+
Subjt:  AIMGKSVGNLIFISSAWKDKAIYGSNARFGLFDRPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]6.2e-1250Show/hide
Query:  VNLWVA----ENLESVLSVFGAIMGKSVGNLIFISSAWKDKAIYGSNARFGLFDRPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELY
        VNLW        LE   S   +   K  G L+F S A     ++ S+ +  L   P GNR SLQT ELDKT  IELPVPDTLPTSAESS ++SSTW+ELY
Subjt:  VNLWVA----ENLESVLSVFGAIMGKSVGNLIFISSAWKDKAIYGSNARFGLFDRPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEG
         ESVH V + +  Q+G
Subjt:  IESVHIVNVLFNVQEG

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]3.3e-1380.39Show/hide
Query:  PTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        P GNR S QTG+LDKTVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein3.6e-1370.18Show/hide
Query:  RPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLF
        RP GNR SLQTG+LDKTVEIELP+PDTLPT AES  ++SSTW+ELY ESVH+  + +
Subjt:  RPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLF

A0A5A7UAH6 CCHC-type domain-containing protein9.4e-1478.43Show/hide
Query:  PTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        P GNR +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+
Subjt:  PTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5A7V2F2 Uncharacterized protein1.1e-1455.29Show/hide
Query:  AIMGKSVGNLIFISSAWKDKAIYGSNARFGLFDRPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        AI+ + V NL+FISS           +     + P GNR SLQ G+L+KTVEIELP+PDTLPTS+ESS+++SSTW+ELY ESVH+
Subjt:  AIMGKSVGNLIFISSAWKDKAIYGSNARFGLFDRPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5D3BET3 Uncharacterized protein1.6e-1380.39Show/hide
Query:  PTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        P GNR S QTG+LDKTVEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+
Subjt:  PTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5D3DWP3 Uncharacterized protein3.0e-1250Show/hide
Query:  VNLWVA----ENLESVLSVFGAIMGKSVGNLIFISSAWKDKAIYGSNARFGLFDRPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELY
        VNLW        LE   S   +   K  G L+F S A     ++ S+ +  L   P GNR SLQT ELDKT  IELPVPDTLPTSAESS ++SSTW+ELY
Subjt:  VNLWVA----ENLESVLSVFGAIMGKSVGNLIFISSAWKDKAIYGSNARFGLFDRPTGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELY

Query:  IESVHIVNVLFNVQEG
         ESVH V + +  Q+G
Subjt:  IESVHIVNVLFNVQEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAAATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGTGTTCA
ACCTGTCAACCTCTGGGTAGCAGAGAACCTTGAATCTGTGTTGTCTGTGTTCGGGGCAATTATGGGAAAATCAGTTGGGAATCTCATTTTCATTTCTTCAGCATGGAAAG
ACAAAGCTATCTATGGTTCTAATGCTCGGTTTGGGTTATTTGACAGGCCAACAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACAGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCTAGTACGTGGGTGGAGTTGTACATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGT
TCAGGAGGGTCAGCAG
mRNA sequenceShow/hide mRNA sequence
CTCTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAAATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGTGTTCA
ACCTGTCAACCTCTGGGTAGCAGAGAACCTTGAATCTGTGTTGTCTGTGTTCGGGGCAATTATGGGAAAATCAGTTGGGAATCTCATTTTCATTTCTTCAGCATGGAAAG
ACAAAGCTATCTATGGTTCTAATGCTCGGTTTGGGTTATTTGACAGGCCAACAGGAAATAGGTCGAGTCTACAAACTGGGGAACTAGATAAGACAGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCTAGTACGTGGGTGGAGTTGTACATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGT
TCAGGAGGGTCAGCAG
Protein sequenceShow/hide protein sequence
LLRERVKEEEEEEFRGFEVEENKKSSCKASHSRICVQPVNLWVAENLESVLSVFGAIMGKSVGNLIFISSAWKDKAIYGSNARFGLFDRPTGNRSSLQTGELDKTVEIEL
PVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQ