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Spg034437 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034437
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionClathrin, heavy chain
Genome locationscaffold4:11651367..11654691
RNA-Seq ExpressionSpg034437
SyntenySpg034437
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030130 - clathrin coat of trans-Golgi network vesicle (cellular component)
GO:0030132 - clathrin coat of coated pit (cellular component)
GO:0071439 - clathrin complex (cellular component)
GO:0005198 - structural molecule activity (molecular function)
GO:0032051 - clathrin light chain binding (molecular function)
InterPro domainsIPR012331 - Clathrin, heavy chain, linker
IPR016024 - Armadillo-type fold
IPR022803 - Ribosomal protein L5 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4346608.1 hypothetical protein G4B88_022023 [Cannabis sativa]4.5e-2378.05Show/hide
Query:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV
        P+ +    E V K  SVPVQTGQT PL QYFGTLL +GKLNAFESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVKV
Subjt:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV

KAF4365735.1 hypothetical protein G4B88_009458 [Cannabis sativa]4.5e-2378.05Show/hide
Query:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV
        P+ +    E V K  SVPVQTGQT PL QYFGTLL +GKLNAFESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVKV
Subjt:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV

KAF4387547.1 hypothetical protein F8388_011695 [Cannabis sativa]4.5e-2378.05Show/hide
Query:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV
        P+ +    E V K  SVPVQTGQT PL QYFGTLL +GKLNAFESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVKV
Subjt:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV

PQP97756.1 hypothetical protein Pyn_10752 [Prunus yedoensis var. nudiflora]4.5e-2387.32Show/hide
Query:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV
        A  +SVPVQTGQT PL QYFGTLL RGKLNAFESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVKV
Subjt:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV

PQQ10459.1 clathrin heavy chain 1 [Prunus yedoensis var. nudiflora]4.5e-2387.32Show/hide
Query:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV
        A  +SVPVQTGQT PL QYFGTLL RGKLNAFESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVKV
Subjt:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV

TrEMBL top hitse value%identityAlignment
A0A0A0K7R5 Clathrin heavy chain2.2e-2387.32Show/hide
Query:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV
        A  +SVPVQTGQT PL QYFGTLL RGKLNAFESLELSRLVVN N KNLLENWL DDKLECSEELGDLVKV
Subjt:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV

A0A314XY34 Clathrin-link domain-containing protein2.2e-2387.32Show/hide
Query:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV
        A  +SVPVQTGQT PL QYFGTLL RGKLNAFESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVKV
Subjt:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV

A0A314YVS4 Clathrin heavy chain 12.2e-2387.32Show/hide
Query:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV
        A  +SVPVQTGQT PL QYFGTLL RGKLNAFESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVKV
Subjt:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV

A0A7J6DKF9 Clathrin heavy chain2.2e-2378.05Show/hide
Query:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV
        P+ +    E V K  SVPVQTGQT PL QYFGTLL +GKLNAFESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVKV
Subjt:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV

A0A7J6F4Z0 Clathrin heavy chain2.2e-2378.05Show/hide
Query:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV
        P+ +    E V K  SVPVQTGQT PL QYFGTLL +GKLNAFESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVKV
Subjt:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVKV

SwissProt top hitse value%identityAlignment
P49951 Clathrin heavy chain 13.9e-1768.66Show/hide
Query:  KSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNH-NKNLLENWLADDKLECSEELGDLVK
        +SVP Q GQTSPL QYFG LL +G+LN +ESLEL R V+    K LLE WL +DKLECSEELGDLVK
Subjt:  KSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNH-NKNLLENWLADDKLECSEELGDLVK

Q0WLB5 Clathrin heavy chain 24.2e-2482.86Show/hide
Query:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK
        A  +SVPVQ GQT PL QYFGTLL RGKLN++ESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVK
Subjt:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK

Q0WNJ6 Clathrin heavy chain 14.2e-2482.86Show/hide
Query:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK
        A  +SVPVQ GQT PL QYFGTLL RGKLN++ESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVK
Subjt:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK

Q2QYW2 Clathrin heavy chain 21.9e-2484.29Show/hide
Query:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK
        A  +SVPVQ GQT PL QYFGTLL RGKLNA+ESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVK
Subjt:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK

Q2RBN7 Clathrin heavy chain 11.1e-2477.78Show/hide
Query:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK
        P  L    E V K  SVPVQ GQT PL QYFGTLL RGKLNA+ESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVK
Subjt:  PIELANLVEAVVK--SVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK

Arabidopsis top hitse value%identityAlignment
AT2G42740.1 ribosomal protein large subunit 16A8.5e-1275Show/hide
Query:  MASKKKFSNPMRDTKVQKLILNISVIESANRLTKAAKVLEQLIGQSHV
        MAS+KK SNPMRD KVQKL+LNISV ES +RLT+A+KVLEQL GQ+ V
Subjt:  MASKKKFSNPMRDTKVQKLILNISVIESANRLTKAAKVLEQLIGQSHV

AT3G08530.1 Clathrin, heavy chain3.0e-2582.86Show/hide
Query:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK
        A  +SVPVQ GQT PL QYFGTLL RGKLN++ESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVK
Subjt:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK

AT3G11130.1 Clathrin, heavy chain3.0e-2582.86Show/hide
Query:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK
        A  +SVPVQ GQT PL QYFGTLL RGKLN++ESLELSRLVVN N KNLLENWLA+DKLECSEELGDLVK
Subjt:  AVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHN-KNLLENWLADDKLECSEELGDLVK

AT3G58700.1 Ribosomal L5P family protein8.5e-1275Show/hide
Query:  MASKKKFSNPMRDTKVQKLILNISVIESANRLTKAAKVLEQLIGQSHV
        MAS+KK SNPMRD KVQKL+LNISV ES +RLT+A+KVLEQL GQ+ V
Subjt:  MASKKKFSNPMRDTKVQKLILNISVIESANRLTKAAKVLEQLIGQSHV

AT4G18730.1 ribosomal protein L16B8.5e-1275Show/hide
Query:  MASKKKFSNPMRDTKVQKLILNISVIESANRLTKAAKVLEQLIGQSHV
        MAS+KK SNPMRD KVQKL+LNISV ES +RLT+A+KVLEQL GQ+ V
Subjt:  MASKKKFSNPMRDTKVQKLILNISVIESANRLTKAAKVLEQLIGQSHV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGAAGAAGAAGTTTTCGAACCCCATGAGGGATACTAAGGTGCAGAAACTCATTCTCAATATCTCAGTCATTGAGAGCGCAAATCGACTTACCAAAGCTGCTAA
GGTGCTCGAGCAACTGATCGGCCAGAGCCATGTGGTTTTTCATGAGAAGTTGCCTGGAGAAAACCTTTATCCTTTGCAGGCTGTTGAATTCGGCAGATTAGTTGGTTCAT
TAAGACTTGATGAACCCAAAGATATTGGTACTGAAGCCAGATGGGCTATTTTTAGCACCCATCTTTTGAGGAGAAACGTTAAGGGCAAGAAAGGTGTTTGGCTGAAACTG
CCTATTGAGCTTGCTAATCTAGTTGAAGCTGTTGTTAAGAGTGTACCAGTGCAAACTGGTCAAACATCACCTCTTCCGCAATACTTTGGAACTTTATTAAAAAGAGGAAA
GTTGAATGCATTTGAGTCATTGGAACTATCTCGTTTAGTTGTAAACCATAACAAGAACCTCTTGGAGAATTGGTTGGCTGATGACAAGTTGGAATGCAGTGAGGAACTAG
GAGATCTTGTGAAGGTTTGGTGTTATGAGACTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGAAGAAGAAGTTTTCGAACCCCATGAGGGATACTAAGGTGCAGAAACTCATTCTCAATATCTCAGTCATTGAGAGCGCAAATCGACTTACCAAAGCTGCTAA
GGTGCTCGAGCAACTGATCGGCCAGAGCCATGTGGTTTTTCATGAGAAGTTGCCTGGAGAAAACCTTTATCCTTTGCAGGCTGTTGAATTCGGCAGATTAGTTGGTTCAT
TAAGACTTGATGAACCCAAAGATATTGGTACTGAAGCCAGATGGGCTATTTTTAGCACCCATCTTTTGAGGAGAAACGTTAAGGGCAAGAAAGGTGTTTGGCTGAAACTG
CCTATTGAGCTTGCTAATCTAGTTGAAGCTGTTGTTAAGAGTGTACCAGTGCAAACTGGTCAAACATCACCTCTTCCGCAATACTTTGGAACTTTATTAAAAAGAGGAAA
GTTGAATGCATTTGAGTCATTGGAACTATCTCGTTTAGTTGTAAACCATAACAAGAACCTCTTGGAGAATTGGTTGGCTGATGACAAGTTGGAATGCAGTGAGGAACTAG
GAGATCTTGTGAAGGTTTGGTGTTATGAGACTTTATAG
Protein sequenceShow/hide protein sequence
MASKKKFSNPMRDTKVQKLILNISVIESANRLTKAAKVLEQLIGQSHVVFHEKLPGENLYPLQAVEFGRLVGSLRLDEPKDIGTEARWAIFSTHLLRRNVKGKKGVWLKL
PIELANLVEAVVKSVPVQTGQTSPLPQYFGTLLKRGKLNAFESLELSRLVVNHNKNLLENWLADDKLECSEELGDLVKVWCYETL