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Spg034457 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034457
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:13716673..13718278
RNA-Seq ExpressionSpg034457
SyntenySpg034457
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]6.2e-1173.08Show/hide
Query:  RPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        RPRGNR  LQT +L KTVEIELP+PDTLPT AES  S+SSTW+ELY ESV++
Subjt:  RPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.6e-1276.47Show/hide
Query:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PRGNR  L T +L KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV++
Subjt:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]2.8e-1172.55Show/hide
Query:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PRGNR  LQ  +L KTVEIELP+PDTLPTS+ESS+S+SSTW+ELY ESV++
Subjt:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]8.0e-1178.43Show/hide
Query:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PRGNR  LQTREL KT  IELPVPDTLPTSAESS S+SSTW+ELY ESV++
Subjt:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.2e-1166.13Show/hide
Query:  IGWASRFHFFRPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        I + + F    PRGNR   QT +L KTVEIELPVPDTLPTSAESS S+SSTW+ELY ESV++
Subjt:  IGWASRFHFFRPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein3.0e-1173.08Show/hide
Query:  RPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        RPRGNR  LQT +L KTVEIELP+PDTLPT AES  S+SSTW+ELY ESV++
Subjt:  RPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5A7UAH6 CCHC-type domain-containing protein2.7e-1276.47Show/hide
Query:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PRGNR  L T +L KTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESV++
Subjt:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5A7V2F2 Uncharacterized protein1.3e-1172.55Show/hide
Query:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PRGNR  LQ  +L KTVEIELP+PDTLPTS+ESS+S+SSTW+ELY ESV++
Subjt:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5D3BET3 Uncharacterized protein6.0e-1266.13Show/hide
Query:  IGWASRFHFFRPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        I + + F    PRGNR   QT +L KTVEIELPVPDTLPTSAESS S+SSTW+ELY ESV++
Subjt:  IGWASRFHFFRPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

A0A5D3DWP3 Uncharacterized protein3.9e-1178.43Show/hide
Query:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI
        PRGNR  LQTREL KT  IELPVPDTLPTSAESS S+SSTW+ELY ESV++
Subjt:  PRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTAATTTCAGGAGGAAGATAAAGGGTAGCAGAGAACCTCAAATCTGTCTTGTCTGTGTTCGGGGCGTTTCTGG
GAAAATTGGTTGGGCATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTG
ATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
GCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTAATTTCAGGAGGAAGATAAAGGGTAGCAGAGAACCTCAAATCTGTCTTGTCTGTGTTCGGGGCGTTTCTGG
GAAAATTGGTTGGGCATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTG
ATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
AQDFRAKQEDLWFNFRRKIKGSREPQICLVCVRGVSGKIGWASRFHFFRPRGNRSGLQTRELAKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIVNVL