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Spg034460 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034460
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:16015401..16019450
RNA-Seq ExpressionSpg034460
SyntenySpg034460
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.6e-2356.92Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRLVM----LVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQQVS
        PL TLSVL DNDAVVSAG+APL +R   RW     PT     M    LVEIELPV + LP SAESSR++SSTW+ELY ESVH+     V+   +  Q   
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRLVM----LVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQQVS

Query:  L------EEDDVRWLHAIFRAKLAGGPGGG
        L        DDV WLHAIFRAK AGGPGGG
Subjt:  L------EEDDVRWLHAIFRAKLAGGPGGG

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.2e-2042.52Show/hide
Query:  STGFSSKAGGSLVSSGVSSILGCY----------------------------IPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWAC
        ST FSSK G  LV S   SIL                                 L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWAC
Subjt:  STGFSSKAGGSLVSSGVSSILGCY----------------------------IPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWAC

Query:  PTQRRLVML----------VEIELPVSNTLPPSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGKNRGKAGI
        PT RR VML          VEIEL V +TLP SAESS ++S         S  IV                DDV WLH +FRAK  GGPGG        +
Subjt:  PTQRRLVML----------VEIELPVSNTLPPSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGKNRGKAGI

Query:  PQK-CDCISGKAKM
        P   C  I  KA +
Subjt:  PQK-CDCISGKAKM

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]6.7e-1938.58Show/hide
Query:  HYQPFFHHFPSKISEHLRERVKEEE---EEECRGFEVEEDRKSSCKASYNRIWSTGFSSKAGGSLVSSGVSSILGCY-----------------------
        H  P F  + S  SE +  R K +    E+         +R SS         ST FSSK G  LV S   SIL                          
Subjt:  HYQPFFHHFPSKISEHLRERVKEEE---EEECRGFEVEEDRKSSCKASYNRIWSTGFSSKAGGSLVSSGVSSILGCY-----------------------

Query:  -----IPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRLVML----------VEIELPVSNTLPPSAESSRTSSSTWVEL
               L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RR VML          VEIEL V +TLP SAESS ++S      
Subjt:  -----IPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRLVML----------VEIELPVSNTLPPSAESSRTSSSTWVEL

Query:  YIESVHIVNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGKNRGKAGIPQK-CDCISGKAKM
           S  IV                DDV WLH +FRAK  GGPGG        +P   C  I  KA +
Subjt:  YIESVHIVNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGKNRGKAGIPQK-CDCISGKAKM

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]7.6e-2356.92Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRLVM----LVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQQVS
        PL TLSVL DNDAVVSAG+APL +R   RW     PT     M    LVEIELPV + LP SAESSR++SSTW+ELY ESVH+     V+   +  Q   
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRLVM----LVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQQVS

Query:  L------EEDDVRWLHAIFRAKLAGGPGGG
        L        DDV WLHAIFRAK AGGPGGG
Subjt:  L------EEDDVRWLHAIFRAKLAGGPGGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]2.6e-2336.75Show/hide
Query:  KTHHRQPSL-PAHYQPFFHHFPSKISEHLRERVKEEEEEECRGFEVEEDRKSSCKASYNRIWSTGFSSKAGGSLVSSGVSSIL-----------------
        K HH +  L   ++  F HHFPSK+SEH  ERVK EEEEE RG  +++  KSSCKA++ RIWSTGFSSK  G LV S   SIL                 
Subjt:  KTHHRQPSL-PAHYQPFFHHFPSKISEHLRERVKEEEEEECRGFEVEEDRKSSCKASYNRIWSTGFSSKAGGSLVSSGVSSIL-----------------

Query:  --------------------------------------------GCYIPLLTLSVLRDNDAVVSAGR--------APLHRRTSKRWLYWACPTQ--RRLV
                                                        PL TLSVLRDNDAVVS G+         P         +   C  +    + 
Subjt:  --------------------------------------------GCYIPLLTLSVLRDNDAVVSAGR--------APLHRRTSKRWLYWACPTQ--RRLV

Query:  MLVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVSLE--------EDDVRWLHAIFRAKLAGGPGGG
          +EIEL V +TLP SAESS ++SSTW+E   E  +  +   +V+   ++  E        E+DV WLHA+FRAK+AGG GGG
Subjt:  MLVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVSLE--------EDDVRWLHAIFRAKLAGGPGGG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.7e-2356.92Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRLVM----LVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQQVS
        PL TLSVL DNDAVVSAG+APL +R   RW     PT     M    LVEIELPV + LP SAESSR++SSTW+ELY ESVH+     V+   +  Q   
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRLVM----LVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQQVS

Query:  L------EEDDVRWLHAIFRAKLAGGPGGG
        L        DDV WLHAIFRAK AGGPGGG
Subjt:  L------EEDDVRWLHAIFRAKLAGGPGGG

A0A5A7VGQ5 Uncharacterized protein5.9e-2142.52Show/hide
Query:  STGFSSKAGGSLVSSGVSSILGCY----------------------------IPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWAC
        ST FSSK G  LV S   SIL                                 L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWAC
Subjt:  STGFSSKAGGSLVSSGVSSILGCY----------------------------IPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWAC

Query:  PTQRRLVML----------VEIELPVSNTLPPSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGKNRGKAGI
        PT RR VML          VEIEL V +TLP SAESS ++S         S  IV                DDV WLH +FRAK  GGPGG        +
Subjt:  PTQRRLVML----------VEIELPVSNTLPPSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGKNRGKAGI

Query:  PQK-CDCISGKAKM
        P   C  I  KA +
Subjt:  PQK-CDCISGKAKM

A0A5D3BG85 Uncharacterized protein3.2e-1938.58Show/hide
Query:  HYQPFFHHFPSKISEHLRERVKEEE---EEECRGFEVEEDRKSSCKASYNRIWSTGFSSKAGGSLVSSGVSSILGCY-----------------------
        H  P F  + S  SE +  R K +    E+         +R SS         ST FSSK G  LV S   SIL                          
Subjt:  HYQPFFHHFPSKISEHLRERVKEEE---EEECRGFEVEEDRKSSCKASYNRIWSTGFSSKAGGSLVSSGVSSILGCY-----------------------

Query:  -----IPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRLVML----------VEIELPVSNTLPPSAESSRTSSSTWVEL
               L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RR VML          VEIEL V +TLP SAESS ++S      
Subjt:  -----IPLLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRLVML----------VEIELPVSNTLPPSAESSRTSSSTWVEL

Query:  YIESVHIVNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGKNRGKAGIPQK-CDCISGKAKM
           S  IV                DDV WLH +FRAK  GGPGG        +P   C  I  KA +
Subjt:  YIESVHIVNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGKNRGKAGIPQK-CDCISGKAKM

A0A5D3BTP3 Reverse transcriptase3.7e-2356.92Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRLVM----LVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQQVS
        PL TLSVL DNDAVVSAG+APL +R   RW     PT     M    LVEIELPV + LP SAESSR++SSTW+ELY ESVH+     V+   +  Q   
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRLVM----LVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHI---VNVLFNVQEGQQVS

Query:  L------EEDDVRWLHAIFRAKLAGGPGGG
        L        DDV WLHAIFRAK AGGPGGG
Subjt:  L------EEDDVRWLHAIFRAKLAGGPGGG

A0A5D3CAC6 Uncharacterized protein1.3e-2336.75Show/hide
Query:  KTHHRQPSL-PAHYQPFFHHFPSKISEHLRERVKEEEEEECRGFEVEEDRKSSCKASYNRIWSTGFSSKAGGSLVSSGVSSIL-----------------
        K HH +  L   ++  F HHFPSK+SEH  ERVK EEEEE RG  +++  KSSCKA++ RIWSTGFSSK  G LV S   SIL                 
Subjt:  KTHHRQPSL-PAHYQPFFHHFPSKISEHLRERVKEEEEEECRGFEVEEDRKSSCKASYNRIWSTGFSSKAGGSLVSSGVSSIL-----------------

Query:  --------------------------------------------GCYIPLLTLSVLRDNDAVVSAGR--------APLHRRTSKRWLYWACPTQ--RRLV
                                                        PL TLSVLRDNDAVVS G+         P         +   C  +    + 
Subjt:  --------------------------------------------GCYIPLLTLSVLRDNDAVVSAGR--------APLHRRTSKRWLYWACPTQ--RRLV

Query:  MLVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVSLE--------EDDVRWLHAIFRAKLAGGPGGG
          +EIEL V +TLP SAESS ++SSTW+E   E  +  +   +V+   ++  E        E+DV WLHA+FRAK+AGG GGG
Subjt:  MLVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVSLE--------EDDVRWLHAIFRAKLAGGPGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAAGACAGCAAGCGGTGGTTTAAAACCCACCACCGACAGCCTTCTTTACCAGCCCATTACCAGCCATTTTTCCATCATTTTCCATCCAAAATTTCAGAGCACTT
GAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATGTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCTACAACAGAATCTGGAGCACAGGAT
TTTCGAGCAAAGCAGGAGGATCTCTGGTGTCCTCTGGTGTTTCAAGCATTCTGGGTTGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTG
AGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATTGGTCATGTTAGTAGAGATCGAGCTCCCGGTGTC
TAATACACTGCCACCGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGG
GTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTAAAAACAGAGGAAAAGCTGGAATT
CCCCAGAAATGCGACTGCATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTGAAAAATTAGAGGCCGTTCCGAGTCGCACGCTGGTCATTGTTGACGAGTCTTC
TTCGCACCTAACCGCTGACCACGCACCAATTGCCTCACTCCATGAGTTGATGAAAGAACTCAAAGGTTGCATTAGTTTGAGAAACAAAACGATTACTGAGGTAGAAGAAA
AGAATGGAACACTATGTCGAACAGTTGACGACTTGCAGTTAATGCTCAAGATTAGAGAGGATCAACTAAGGGAGCTCATTGTTGGGTTTCCAGAGTGGGTGAAAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAAGACAGCAAGCGGTGGTTTAAAACCCACCACCGACAGCCTTCTTTACCAGCCCATTACCAGCCATTTTTCCATCATTTTCCATCCAAAATTTCAGAGCACTT
GAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATGTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCTACAACAGAATCTGGAGCACAGGAT
TTTCGAGCAAAGCAGGAGGATCTCTGGTGTCCTCTGGTGTTTCAAGCATTCTGGGTTGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTG
AGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATTGGTCATGTTAGTAGAGATCGAGCTCCCGGTGTC
TAATACACTGCCACCGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGG
GTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTAAAAACAGAGGAAAAGCTGGAATT
CCCCAGAAATGCGACTGCATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTGAAAAATTAGAGGCCGTTCCGAGTCGCACGCTGGTCATTGTTGACGAGTCTTC
TTCGCACCTAACCGCTGACCACGCACCAATTGCCTCACTCCATGAGTTGATGAAAGAACTCAAAGGTTGCATTAGTTTGAGAAACAAAACGATTACTGAGGTAGAAGAAA
AGAATGGAACACTATGTCGAACAGTTGACGACTTGCAGTTAATGCTCAAGATTAGAGAGGATCAACTAAGGGAGCTCATTGTTGGGTTTCCAGAGTGGGTGAAAATGTAG
Protein sequenceShow/hide protein sequence
MGKDSKRWFKTHHRQPSLPAHYQPFFHHFPSKISEHLRERVKEEEEEECRGFEVEEDRKSSCKASYNRIWSTGFSSKAGGSLVSSGVSSILGCYIPLLTLSVLRDNDAVV
SAGRAPLHRRTSKRWLYWACPTQRRLVMLVEIELPVSNTLPPSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGGKNRGKAGI
PQKCDCISGKAKMKCDRISEKLEAVPSRTLVIVDESSSHLTADHAPIASLHELMKELKGCISLRNKTITEVEEKNGTLCRTVDDLQLMLKIREDQLRELIVGFPEWVKM