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Spg034466 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034466
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationscaffold4:11812313..11816444
RNA-Seq ExpressionSpg034466
SyntenySpg034466
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035081.1 hypothetical protein E6C27_scaffold57G001500 [Cucumis melo var. makuwa]4.0e-0553.33Show/hide
Query:  SVLKGTTSLLSLNWVGVNSILQDY-VPSYLPVPIP-EMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL
        SVLKGTT LL+L  VGV+SIL    +  YL +P+  E     S  C   LT+ DLR+ P +Q+FIVSSGLR SYL
Subjt:  SVLKGTTSLLSLNWVGVNSILQDY-VPSYLPVPIP-EMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL

KAA0047869.1 hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa]2.3e-0852.5Show/hide
Query:  PFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL
        P V    SVLKGTT LLS  WVGVNS+L     +   V  P+    L +R     T+ DLRI  N+Q+FIVSSGLRSSYL
Subjt:  PFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL

KAA0054446.1 hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa]3.9e-0849.41Show/hide
Query:  MRGRDPFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL
        MRG  P+V    SVLKGTT LL+L WVGVNSIL    P+       +             T+ADLRI   +QEF VSSGLR SYL
Subjt:  MRGRDPFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL

TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]9.6e-0768Show/hide
Query:  YVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL
        YVPSY     PEMGGLL +R  A LT+ADLRI  N+Q+FIVS GLRSSYL
Subjt:  YVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL

TrEMBL top hitse value%identityAlignment
A0A5A7U348 Uncharacterized protein1.1e-0852.5Show/hide
Query:  PFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL
        P V    SVLKGTT LLS  WVGVNS+L     +   V  P+    L +R     T+ DLRI  N+Q+FIVSSGLRSSYL
Subjt:  PFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL

A0A5D3BX92 Uncharacterized protein2.0e-0553.33Show/hide
Query:  SVLKGTTSLLSLNWVGVNSILQDY-VPSYLPVPIP-EMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL
        SVLKGTT LL+L  VGV+SIL    +  YL +P+  E     S  C   LT+ DLR+ P +Q+FIVSSGLR SYL
Subjt:  SVLKGTTSLLSLNWVGVNSILQDY-VPSYLPVPIP-EMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL

A0A5D3CRT6 Uncharacterized protein1.9e-0849.41Show/hide
Query:  MRGRDPFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL
        MRG  P+V    SVLKGTT LL+L WVGVNSIL    P+       +             T+ADLRI   +QEF VSSGLR SYL
Subjt:  MRGRDPFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL

A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass4.6e-0768Show/hide
Query:  YVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL
        YVPSY     PEMGGLL +R  A LT+ADLRI  N+Q+FIVS GLRSSYL
Subjt:  YVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGCGAGATCCCTTTGTTCACGTCTCGAAGTCAGTACTTAAGGGAACAACCTCTCTACTATCCCTAAATTGGGTAGGAGTAAATTCCATTTTGCAAGACTATGT
CCCCAGCTATCTACCCGTTCCTATTCCTGAAATGGGGGGTTTATTGAGTCGGCGATGTGGAGCCACTCTCACCCATGCAGATCTAAGGATAAGCCCGAATAAACAGGAGT
TCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGATCTCAGAGGCACGCACCAACAGGCTACCGTTAGGAAAGACAACTATTGCTTCAGAACCGGCCCAGACCTCACG
AACCGTTGCGAACCGATCACCAAAAAGTCGAACCAAGCCAAAACTGGGCTGGACCGGGCCAAACCGACCCCAGACCAGCCCAGATCGTTGAATCGAACTGCAAGACTTGT
TGAACTGCGCACGTCTGAAGCCCTAACCGCGCGCCGCACGAACTCGCGACAGCGTCCCGACGTTGTTACGCCTGGAACGAAATTCTGGGCGAAAACAGCATTGTTCTTCG
ACTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGCGAGATCCCTTTGTTCACGTCTCGAAGTCAGTACTTAAGGGAACAACCTCTCTACTATCCCTAAATTGGGTAGGAGTAAATTCCATTTTGCAAGACTATGT
CCCCAGCTATCTACCCGTTCCTATTCCTGAAATGGGGGGTTTATTGAGTCGGCGATGTGGAGCCACTCTCACCCATGCAGATCTAAGGATAAGCCCGAATAAACAGGAGT
TCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGATCTCAGAGGCACGCACCAACAGGCTACCGTTAGGAAAGACAACTATTGCTTCAGAACCGGCCCAGACCTCACG
AACCGTTGCGAACCGATCACCAAAAAGTCGAACCAAGCCAAAACTGGGCTGGACCGGGCCAAACCGACCCCAGACCAGCCCAGATCGTTGAATCGAACTGCAAGACTTGT
TGAACTGCGCACGTCTGAAGCCCTAACCGCGCGCCGCACGAACTCGCGACAGCGTCCCGACGTTGTTACGCCTGGAACGAAATTCTGGGCGAAAACAGCATTGTTCTTCG
ACTTTTAG
Protein sequenceShow/hide protein sequence
MRGRDPFVHVSKSVLKGTTSLLSLNWVGVNSILQDYVPSYLPVPIPEMGGLLSRRCGATLTHADLRISPNKQEFIVSSGLRSSYLDLRGTHQQATVRKDNYCFRTGPDLT
NRCEPITKKSNQAKTGLDRAKPTPDQPRSLNRTARLVELRTSEALTARRTNSRQRPDVVTPGTKFWAKTALFFDF