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Spg034470 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034470
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold4:13190742..13196581
RNA-Seq ExpressionSpg034470
SyntenySpg034470
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]8.4e-3048.53Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI
        MQSQPLQNLGA ++    LF LSY EGTK     ++       S  L   E   ++KSNQKLY  LE +++ NLE++ S      G   GN + + +  +
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI

Query:  ------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLA
              PLSTLSVLRDN+ V  IELPVPD LPTSAESS S+SSTW                           FNV VGSTGIVRGDDVCWL+AVFRAK  
Subjt:  ------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLA

Query:  GGPG
        GGPG
Subjt:  GGPG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-2948.24Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-----
        MQSQPLQNLGA   T     G S   G   +F     I           V+KSNQKLY ++E   +   + +L           GN   + SG +     
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-----

Query:  -PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG
         PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW                           F+VLVGSTGIVRGDDVCWL+AVFRAK  GGPG
Subjt:  -PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-2749.73Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHS----GVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-
        MQS PL+NLGA ++    LFGLSY EGTK     ++   G    F  +     V KSNQKLY ++E                  GK  GN   + +G + 
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHS----GVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-

Query:  -----PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW-----------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG
             PLST SVL DNDAVVEIEL VPDTLPTSAES  S+SS +           FNV VGSTGIVRGDDVC L+ VFRAK AGGPG
Subjt:  -----PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW-----------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]8.6e-2747.98Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI
        MQSQPLQNLGA ++    LF LSY EGTK     ++      +S  L   E   ++K NQKLY              L   G  L    G L    +   
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI

Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG
         LSTLSVLRDN+AV  IELPVPDTLPTSAESS S+SSTW                           FNV VGSTGIVRGDDVCWL+AVFRAK  GGPG
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.4e-2948.24Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-----
        MQSQPLQNLGA   T     G S   G   +F     I           V+KSNQKLY ++E   +   + +L           GN   + SG +     
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-----

Query:  -PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG
         PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW                           F+VLVGSTGIVRGDDVCWL+AVFRAK  GGPG
Subjt:  -PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein4.0e-3048.53Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI
        MQSQPLQNLGA ++    LF LSY EGTK     ++       S  L   E   ++KSNQKLY  LE +++ NLE++ S      G   GN + + +  +
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI

Query:  ------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLA
              PLSTLSVLRDN+ V  IELPVPD LPTSAESS S+SSTW                           FNV VGSTGIVRGDDVCWL+AVFRAK  
Subjt:  ------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLA

Query:  GGPG
        GGPG
Subjt:  GGPG

A0A5A7V9N3 Reverse transcriptase6.9e-3048.24Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-----
        MQSQPLQNLGA   T     G S   G   +F     I           V+KSNQKLY ++E   +   + +L           GN   + SG +     
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-----

Query:  -PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG
         PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW                           F+VLVGSTGIVRGDDVCWL+AVFRAK  GGPG
Subjt:  -PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein8.4e-2849.73Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHS----GVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-
        MQS PL+NLGA ++    LFGLSY EGTK     ++   G    F  +     V KSNQKLY ++E                  GK  GN   + +G + 
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHS----GVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-

Query:  -----PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW-----------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG
             PLST SVL DNDAVVEIEL VPDTLPTSAES  S+SS +           FNV VGSTGIVRGDDVC L+ VFRAK AGGPG
Subjt:  -----PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW-----------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG

A0A5D3CJX3 CCHC-type domain-containing protein4.2e-2747.98Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI
        MQSQPLQNLGA ++    LF LSY EGTK     ++      +S  L   E   ++K NQKLY              L   G  L    G L    +   
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI

Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG
         LSTLSVLRDN+AV  IELPVPDTLPTSAESS S+SSTW                           FNV VGSTGIVRGDDVCWL+AVFRAK  GGPG
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG

A0A5D3DSY7 Putative Retrotransposon protein6.9e-3048.24Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-----
        MQSQPLQNLGA   T     G S   G   +F     I           V+KSNQKLY ++E   +   + +L           GN   + SG +     
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYI-----

Query:  -PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG
         PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW                           F+VLVGSTGIVRGDDVCWL+AVFRAK  GGPG
Subjt:  -PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGATTTTCGAGCAAACCAGGAG
GATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTGGGAGTTAGAAAAAAAGGTAGCAGAGAACCTCGAATCTGTGTTGT
CTGTGTTCGGGGCAATGCTGGGAAAATCGGTTGGGAATCTCATTTTTATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTA
GAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTTAGTAGGGTCAACAGGGATCGTTAGAGG
TGACGATGTCTGTTGGCTTAACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGACGGGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTTTATGGCACG
AGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTGAGGACTAAGAGGTCTCCAATCTCTTTACTCTACTCGGCTCCCAAA
AGTGGAAATGAGAGTGAACTCGTCCCCAAAAGTGGAATGAATTTGACTTGGGCGGCTATCTCCTTTTATAGAGTTGAGGAAAGCTTGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGATTTTCGAGCAAACCAGGAG
GATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTGGGAGTTAGAAAAAAAGGTAGCAGAGAACCTCGAATCTGTGTTGT
CTGTGTTCGGGGCAATGCTGGGAAAATCGGTTGGGAATCTCATTTTTATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTA
GAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTTAGTAGGGTCAACAGGGATCGTTAGAGG
TGACGATGTCTGTTGGCTTAACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCAGGACGGGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTTTATGGCACG
AGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTGAGGACTAAGAGGTCTCCAATCTCTTTACTCTACTCGGCTCCCAAA
AGTGGAAATGAGAGTGAACTCGTCCCCAAAAGTGGAATGAATTTGACTTGGGCGGCTATCTCCTTTTATAGAGTTGAGGAAAGCTTGAATTAG
Protein sequenceShow/hide protein sequence
MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNQKLYWELEKKVAENLESVLSVFGAMLGKSVGNLIFISSGYIPLSTLSVLRDNDAVV
EIELPVPDTLPTSAESSRSSSSTWFNVLVGSTGIVRGDDVCWLNAVFRAKLAGGPGRVVSPGLEQWALPSLWHERDFCLLVGPQTGCSLEEHWYLRTKRSPISLLYSAPK
SGNESELVPKSGMNLTWAAISFYRVEESLN