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Spg034472 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034472
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPMD domain-containing protein
Genome locationscaffold4:14544426..14546659
RNA-Seq ExpressionSpg034472
SyntenySpg034472
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041618.1 hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa]8.6e-2662.5Show/hide
Query:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
        +I+ Q R  +V KVPG+F FT  YWEWL+LVVGRN + LY  HL++ V  SLYTYDRN+DV+RAFCEAWCP+TNTLHT A  + I L+
Subjt:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
KAA0060611.1 hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]1.9e-2561.36Show/hide
Query:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
        +I+ Q R  +V+KVPG+F FT  YWEWL+LVVG+N + LY  HL+  V  SLYTYDRN DV+RAFCEAWCP+TNTLHT A  + I L+
Subjt:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
KAA0061098.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.0e-2663.64Show/hide
Query:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
        +I+ Q    +V KVPG+F FT  YWEWL+LVVGRN + LY  HL+ AV  SLYTYDRNNDV+RAFCEAWCP+TNTLHT A  + I L+
Subjt:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
TYK02261.1 hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]1.9e-2561.36Show/hide
Query:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
        +I+ Q R  +V+KVPG+F FT  YWEWL+LVVG+N + LY  HL+  V  SLYTYDRN DV+RAFCEAWCP+TNTLHT A  + I L+
Subjt:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
TYK19639.1 hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa]8.6e-2662.5Show/hide
Query:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
        +I+ Q R  +V KVPG+F FT  YWEWL+LVVGRN + LY  HL++ V  SLYTYDRN+DV+RAFCEAWCP+TNTLHT A  + I L+
Subjt:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
TrEMBL top hitse value%identityAlignment
A0A5A7TFC8 PMD domain-containing protein4.2e-2662.5Show/hide
Query:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
        +I+ Q R  +V KVPG+F FT  YWEWL+LVVGRN + LY  HL++ V  SLYTYDRN+DV+RAFCEAWCP+TNTLHT A  + I L+
Subjt:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
A0A5A7V4F4 PMD domain-containing protein9.3e-2661.36Show/hide
Query:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
        +I+ Q R  +V+KVPG+F FT  YWEWL+LVVG+N + LY  HL+  V  SLYTYDRN DV+RAFCEAWCP+TNTLHT A  + I L+
Subjt:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
A0A5D3BRA8 PMD domain-containing protein9.3e-2661.36Show/hide
Query:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
        +I+ Q R  +V+KVPG+F FT  YWEWL+LVVG+N + LY  HL+  V  SLYTYDRN DV+RAFCEAWCP+TNTLHT A  + I L+
Subjt:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
A0A5D3BXQ4 Putative mitochondrial protein2.4e-2663.64Show/hide
Query:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
        +I+ Q    +V KVPG+F FT  YWEWL+LVVGRN + LY  HL+ AV  SLYTYDRNNDV+RAFCEAWCP+TNTLHT A  + I L+
Subjt:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
A0A5D3D7V4 PMD domain-containing protein4.2e-2662.5Show/hide
Query:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
        +I+ Q R  +V KVPG+F FT  YWEWL+LVVGRN + LY  HL++ V  SLYTYDRN+DV+RAFCEAWCP+TNTLHT A  + I L+
Subjt:  MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGATGACCAAGCCCGTTTGAATTCTGTGATGAAGGTTCCTGGAGACTTCTCCTTCACTTCGCTCTATTGGGAATGGTTGAAGCTGGTAGTTGGTCGCAATGAGCA
GAAGCTTTATGAGATTCATTTATTTAATGCGGTGATGGTCTCTCTTTATACGTATGATCGGAATAACGATGTGATTCGGGCCTTCTGTGAAGCTTGGTGCCCCACAACCA
ATACTCTTCATACTGCCGCAGCCTTGATCGAGATTCGCCTTTTCCTCCGAAAATTTGCAGAAAATCAACAACCTCCAAGAGCTTTCTTTGCTGGAATTTGTTCAAGAACA
CCACCAATCGATCACACCGAATATAGAGTTGAGAGAACACCAACCTTTGTAGCTCACTTATGTGGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTGGACAACCTC
TAGAGTCTTCCCTACTATTCTCTTGGGCCTAGAAAGACTTGTGGGAGTCTATAGAAGAAAGATAGAAGGGAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGATGACCAAGCCCGTTTGAATTCTGTGATGAAGGTTCCTGGAGACTTCTCCTTCACTTCGCTCTATTGGGAATGGTTGAAGCTGGTAGTTGGTCGCAATGAGCA
GAAGCTTTATGAGATTCATTTATTTAATGCGGTGATGGTCTCTCTTTATACGTATGATCGGAATAACGATGTGATTCGGGCCTTCTGTGAAGCTTGGTGCCCCACAACCA
ATACTCTTCATACTGCCGCAGCCTTGATCGAGATTCGCCTTTTCCTCCGAAAATTTGCAGAAAATCAACAACCTCCAAGAGCTTTCTTTGCTGGAATTTGTTCAAGAACA
CCACCAATCGATCACACCGAATATAGAGTTGAGAGAACACCAACCTTTGTAGCTCACTTATGTGGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTGGACAACCTC
TAGAGTCTTCCCTACTATTCTCTTGGGCCTAGAAAGACTTGTGGGAGTCTATAGAAGAAAGATAGAAGGGAATGCTTGA
Protein sequenceShow/hide protein sequence
MIDDQARLNSVMKVPGDFSFTSLYWEWLKLVVGRNEQKLYEIHLFNAVMVSLYTYDRNNDVIRAFCEAWCPTTNTLHTAAALIEIRLFLRKFAENQQPPRAFFAGICSRT
PPIDHTEYRVERTPTFVAHLCGTPCGVCLSYAPWTTSRVFPTILLGLERLVGVYRRKIEGNA