; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034483 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034483
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold4:14640948..14643496
RNA-Seq ExpressionSpg034483
SyntenySpg034483
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-2062.89Show/hide
Query:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE
        +SMAT EEENQC +ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +   K F+E   D K+ S +PSRMKRKLSV INTEGSL ++
Subjt:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-2063.92Show/hide
Query:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMKRKLSV INTEGSL ++
Subjt:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.1e-2063.92Show/hide
Query:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMKRKLSV INTEGSL ++
Subjt:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-2063.92Show/hide
Query:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE
        +SMAT EEENQC  ST  R S F+RLS+STSKK R STS FDRLK+TNDQ +R++  L  K F+E   D K+ S +PSRMKRKLSV INTEGSL L+
Subjt:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE

TYK30263.1 gag protease polyprotein [Cucumis melo var. makuwa]2.5e-2065.96Show/hide
Query:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSL
        +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  KLF+E   D K+ S +PSRMKRKLSV INTE SL
Subjt:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein1.2e-2062.89Show/hide
Query:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE
        +SMAT EEENQC +ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +   K F+E   D K+ S +PSRMKRKLSV INTEGSL ++
Subjt:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE

A0A5A7TQ06 Retrotransposon gag protein5.4e-2163.92Show/hide
Query:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMKRKLSV INTEGSL ++
Subjt:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE

A0A5A7VDY3 Ty3-gypsy retrotransposon protein2.0e-2063.92Show/hide
Query:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE
        +SMAT EEENQC  ST  R S F+RLS+STSKK R STS FDRLK+TNDQ +R++  L  K F+E   D K+ S +PSRMKRKLSV INTEGSL L+
Subjt:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE

A0A5D3BBF9 Gag protease polyprotein5.4e-2163.92Show/hide
Query:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE
        +SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++ +L  K F+E   D K+ S +PSRMKRKLSV INTEGSL ++
Subjt:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLE

A0A5D3E2D7 Gag protease polyprotein1.2e-2065.96Show/hide
Query:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSL
        +SMAT EEENQC  ST TR SAF+RLS+STSKK R STS FDR K+TN+Q +R+I +L  KLF+E   D K+ S +PSRMKRKLSV INTE SL
Subjt:  MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCACAACAGAAGAAGAAAATCAATGTTTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAAATAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTATCTGTTCTCATAAATACAGAAGGTTCCTTGAAGCTGGAGTTCCTTCCCACCAAGTTTGAAGGTTCTCACGCGCTTCGC
TGCAATTCCTTCTCTCCAAGTTCGAAGGTTTTCACACGCTTCGCTGCTGTTCATTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCCCTGCAGTTCTTTCTCTCCAAGTT
CGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTGCTTACGCTGTACACTACTGTGTTGTTCCTTCTCCAAGTTTGTAGGTTCTCCGCTGCAT
GCTCCTGCGTTGCTCCTTCTCCAAGTCCAAAGGTTTGCACGTGTTGTTATGCTGCTTCGCTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGGCTGCGTTGTTGCGCTA
CTTCTTTCTTTAAGTTCGAAGGTACTCACGTTGCGCTGTTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGAAGTTGCGCTGCTGCGCTACTTCCTTCACCAACTTGA
AGGTTCTCCGATGCACGCTCCTACATTGCTCTTTCCCCAAGTTCGAAGGTTCTTGGCCTGCATTGTTGCACTACTTCCTTCTTTAAGTTTGAAGGTTCTCATGTTGCACT
ATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCGCTGCTTCTTCACCAAGTTCGAAGGTTCTCACGCTGTTTCGATGATGTTCCTTCTTCAAGTTTGAAA
CTTTTCTCCAAGTTTGAAGATTCTCATGCACTTCGCTGCAGTTCATTCTCTCCAAGTTTGAAGGTTCTCACACGCTTCGCTACAGTTCCTTATCCAAGTTCGAAGGTTCT
GACACTACGTTGCTTCTTTCTCCAAGTTCGAAGTTTCTCCATTGAACGCTCCTGCGTTTCTCCTTCTCCAAGTTTGAAGGTTTGCACGTGTTGTTATGTTGCTTCGCTGT
CGTTTCTTCTCCAAGTTCGAAGGTTCCTAGGCTGTGTTGTTGCGCTACTTCCTTCTTTAAGTTCGAAGGTTCTCACGTTGTGCTGTTGTGCTGCTTCCTTCTGTAAGTTC
GAAGGTTTGCACGTTGTTATGCTGCTTTGTTGTTGTTCCTTCTCTCTAAGTTCGAAGGTTCTCACGTTGCTTCGTTGTTGTTCCTTCTCTAAATTCGAAGGTTCTCACGC
TACATTGTTCGAAGGTTCTTCCTCTTACACTGCATTGCATCGCTGTTCCTTCAACAAGTTCGAAGGTTCTTACGTTACAGCAGTAAAGGAGCCCAAATGGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCACAACAGAAGAAGAAAATCAATGTTTGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAAATAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTATCTGTTCTCATAAATACAGAAGGTTCCTTGAAGCTGGAGTTCCTTCCCACCAAGTTTGAAGGTTCTCACGCGCTTCGC
TGCAATTCCTTCTCTCCAAGTTCGAAGGTTTTCACACGCTTCGCTGCTGTTCATTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCCCTGCAGTTCTTTCTCTCCAAGTT
CGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTGCTTACGCTGTACACTACTGTGTTGTTCCTTCTCCAAGTTTGTAGGTTCTCCGCTGCAT
GCTCCTGCGTTGCTCCTTCTCCAAGTCCAAAGGTTTGCACGTGTTGTTATGCTGCTTCGCTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGGCTGCGTTGTTGCGCTA
CTTCTTTCTTTAAGTTCGAAGGTACTCACGTTGCGCTGTTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGAAGTTGCGCTGCTGCGCTACTTCCTTCACCAACTTGA
AGGTTCTCCGATGCACGCTCCTACATTGCTCTTTCCCCAAGTTCGAAGGTTCTTGGCCTGCATTGTTGCACTACTTCCTTCTTTAAGTTTGAAGGTTCTCATGTTGCACT
ATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCGCTGCTTCTTCACCAAGTTCGAAGGTTCTCACGCTGTTTCGATGATGTTCCTTCTTCAAGTTTGAAA
CTTTTCTCCAAGTTTGAAGATTCTCATGCACTTCGCTGCAGTTCATTCTCTCCAAGTTTGAAGGTTCTCACACGCTTCGCTACAGTTCCTTATCCAAGTTCGAAGGTTCT
GACACTACGTTGCTTCTTTCTCCAAGTTCGAAGTTTCTCCATTGAACGCTCCTGCGTTTCTCCTTCTCCAAGTTTGAAGGTTTGCACGTGTTGTTATGTTGCTTCGCTGT
CGTTTCTTCTCCAAGTTCGAAGGTTCCTAGGCTGTGTTGTTGCGCTACTTCCTTCTTTAAGTTCGAAGGTTCTCACGTTGTGCTGTTGTGCTGCTTCCTTCTGTAAGTTC
GAAGGTTTGCACGTTGTTATGCTGCTTTGTTGTTGTTCCTTCTCTCTAAGTTCGAAGGTTCTCACGTTGCTTCGTTGTTGTTCCTTCTCTAAATTCGAAGGTTCTCACGC
TACATTGTTCGAAGGTTCTTCCTCTTACACTGCATTGCATCGCTGTTCCTTCAACAAGTTCGAAGGTTCTTACGTTACAGCAGTAAAGGAGCCCAAATGGGAATGA
Protein sequenceShow/hide protein sequence
MSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKINNLDVKLFNEVGSDKKLQSSIPSRMKRKLSVLINTEGSLKLEFLPTKFEGSHALR
CNSFSPSSKVFTRFAAVHSLQVRRFSRASLQFFLSKFEGSHAFRCSSFSPSSRVLTLYTTVLFLLQVCRFSAACSCVAPSPSPKVCTCCYAASLLFLLQVRRFSGCVVAL
LLSLSSKVLTLRCCAPSFSKFEGSEVALLRYFLHQLEGSPMHAPTLLFPQVRRFLACIVALLPSLSLKVLMLHYCAPSFSKFEGSDVALLLHQVRRFSRCFDDVPSSSLK
LFSKFEDSHALRCSSFSPSLKVLTRFATVPYPSSKVLTLRCFFLQVRSFSIERSCVSPSPSLKVCTCCYVASLSFLLQVRRFLGCVVALLPSLSSKVLTLCCCAASFCKF
EGLHVVMLLCCCSFSLSSKVLTLLRCCSFSKFEGSHATLFEGSSSYTALHRCSFNKFEGSYVTAVKEPKWE