; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034523 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034523
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:13183488..13185866
RNA-Seq ExpressionSpg034523
SyntenySpg034523
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-2047.01Show/hide
Query:  PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTWF---------------------------------------------------------NVSVGS
        PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPTT F                                                            + S
Subjt:  PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTWF---------------------------------------------------------NVSVGS

Query:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS
          IVRGDDVCWLHA+FRAK AGGPGGGVTTWYQS
Subjt:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.9e-2542.79Show/hide
Query:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRR----ISGVLWCFEHSGVYKSNQKLYWELEKGVA--ENLESVLFVFRAMLGKSVGNLIFISS
        MQSQPLQNLGA ++   VLF LSY +GTK +  F +        S  L   E   ++KSNQKLY  LE  ++  ENL+S         G   GN + + +
Subjt:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRR----ISGVLWCFEHSGVYKSNQKLYWELEKGVA--ENLESVLFVFRAMLGKSVGNLIFISS

Query:  GYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWE-CWAGPTTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKL
          +      PLSTLSVLRDN+ V+      +     E   +  +TW                           FNVSVGSTGIVRGDDVCWLHAVFRAK 
Subjt:  GYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWE-CWAGPTTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGGVTTWYQSS
         GGPGGGVTTW  S+
Subjt:  AGGPGGGVTTWYQSS

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.0e-2343.92Show/hide
Query:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRRISGVLWCFEHSGVYKSNQKLYWELEKGVAENLESVLFVFRAMLGKSVGNLIFISSGYI---
        MQS PL+NLGA ++   VLFGLSY +GTK         R            V KSNQKLY ++E G +              GK  GN   + +G +   
Subjt:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRRISGVLWCFEHSGVYKSNQKLYWELEKGVAENLESVLFVFRAMLGKSVGNLIFISSGYI---

Query:  ---PLSTLSVLRDNDAVVS-----AGRAPLRQRRW---------ECWAGPTTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
           PLST SVL DNDAVV          P     +         +  +G    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  ---PLSTLSVLRDNDAVVS-----AGRAPLRQRRW---------ECWAGPTTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-2047.01Show/hide
Query:  PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTWF---------------------------------------------------------NVSVGS
        PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPTT F                                                            + S
Subjt:  PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTWF---------------------------------------------------------NVSVGS

Query:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS
          IVRGDDVCWLHA+FRAK AGGPGGGVTTWYQS
Subjt:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.5e-2243.48Show/hide
Query:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRR----ISGVLWCFEHSGVYKSNQKLYWELEKGVAENLESVLFVFRAMLGKSVGNLIFISSGY
        MQSQPLQNLGA ++   VLF LSY +GTK +  F +       +S  L   E   ++K NQKLY     G   N  S+        G+    +IF     
Subjt:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRR----ISGVLWCFEHSGVYKSNQKLYWELEKGVAENLESVLFVFRAMLGKSVGNLIFISSGY

Query:  IPLSTLSVLRDNDAVV----------SAGRAPLRQRRW----------ECWAGPTTW--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
          LSTLSVLRDN+AV+          SA  +      W          E +   T          FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGV
Subjt:  IPLSTLSVLRDNDAVV----------SAGRAPLRQRRW----------ECWAGPTTW--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

Query:  TTWYQSS
        TTW  S+
Subjt:  TTWYQSS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase9.1e-2147.01Show/hide
Query:  PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTWF---------------------------------------------------------NVSVGS
        PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPTT F                                                            + S
Subjt:  PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTWF---------------------------------------------------------NVSVGS

Query:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS
          IVRGDDVCWLHA+FRAK AGGPGGGVTTWYQS
Subjt:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS

A0A5A7UT17 CCHC-type domain-containing protein9.4e-2642.79Show/hide
Query:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRR----ISGVLWCFEHSGVYKSNQKLYWELEKGVA--ENLESVLFVFRAMLGKSVGNLIFISS
        MQSQPLQNLGA ++   VLF LSY +GTK +  F +        S  L   E   ++KSNQKLY  LE  ++  ENL+S         G   GN + + +
Subjt:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRR----ISGVLWCFEHSGVYKSNQKLYWELEKGVA--ENLESVLFVFRAMLGKSVGNLIFISS

Query:  GYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWE-CWAGPTTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKL
          +      PLSTLSVLRDN+ V+      +     E   +  +TW                           FNVSVGSTGIVRGDDVCWLHAVFRAK 
Subjt:  GYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWE-CWAGPTTW---------------------------FNVSVGSTGIVRGDDVCWLHAVFRAKL

Query:  AGGPGGGVTTWYQSS
         GGPGGGVTTW  S+
Subjt:  AGGPGGGVTTWYQSS

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein4.4e-2343.92Show/hide
Query:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRRISGVLWCFEHSGVYKSNQKLYWELEKGVAENLESVLFVFRAMLGKSVGNLIFISSGYI---
        MQS PL+NLGA ++   VLFGLSY +GTK         R            V KSNQKLY ++E G +              GK  GN   + +G +   
Subjt:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRRISGVLWCFEHSGVYKSNQKLYWELEKGVAENLESVLFVFRAMLGKSVGNLIFISSGYI---

Query:  ---PLSTLSVLRDNDAVVS-----AGRAPLRQRRW---------ECWAGPTTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
           PLST SVL DNDAVV          P     +         +  +G    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  ---PLSTLSVLRDNDAVVS-----AGRAPLRQRRW---------ECWAGPTTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT

A0A5D3BTP3 Reverse transcriptase9.1e-2147.01Show/hide
Query:  PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTWF---------------------------------------------------------NVSVGS
        PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPTT F                                                            + S
Subjt:  PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTWF---------------------------------------------------------NVSVGS

Query:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS
          IVRGDDVCWLHA+FRAK AGGPGGGVTTWYQS
Subjt:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS

A0A5D3CJX3 CCHC-type domain-containing protein2.2e-2243.48Show/hide
Query:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRR----ISGVLWCFEHSGVYKSNQKLYWELEKGVAENLESVLFVFRAMLGKSVGNLIFISSGY
        MQSQPLQNLGA ++   VLF LSY +GTK +  F +       +S  L   E   ++K NQKLY     G   N  S+        G+    +IF     
Subjt:  MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRR----ISGVLWCFEHSGVYKSNQKLYWELEKGVAENLESVLFVFRAMLGKSVGNLIFISSGY

Query:  IPLSTLSVLRDNDAVV----------SAGRAPLRQRRW----------ECWAGPTTW--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
          LSTLSVLRDN+AV+          SA  +      W          E +   T          FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGV
Subjt:  IPLSTLSVLRDNDAVV----------SAGRAPLRQRRW----------ECWAGPTTW--------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

Query:  TTWYQSS
        TTW  S+
Subjt:  TTWYQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTGTTTTATTCGGTTTGAGCTACACAAAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAA
CAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTGGGAGTTAGAAAAAGGCGTAGCAGAGAACCTCGAATCTG
TGTTGTTTGTGTTCCGGGCAATGCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCT
GTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGA
CGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTGTTTTATTCGGTTTGAGCTACACAAAAGGAACTAAGAGAGCACAGGATTTTCGAGCAAA
CAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTGGGAGTTAGAAAAAGGCGTAGCAGAGAACCTCGAATCTG
TGTTGTTTGTGTTCCGGGCAATGCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCT
GTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGA
CGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MQSQPLQNLGAKLSTSGVLFGLSYTKGTKRAQDFRANRRISGVLWCFEHSGVYKSNQKLYWELEKGVAENLESVLFVFRAMLGKSVGNLIFISSGYIPLSTLSVLRDNDA
VVSAGRAPLRQRRWECWAGPTTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQSS