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Spg034527 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034527
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGlycine--tRNA ligase
Genome locationscaffold4:16256866..16261137
RNA-Seq ExpressionSpg034527
SyntenySpg034527
Gene Ontology termsGO:0006426 - glycyl-tRNA aminoacylation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0004820 - glycine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR015944 - Glycine-tRNA ligase, beta subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140508.3 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucumis sativus]5.9e-4998Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWLKTRESLGHPLGV SDPVDLVCPKELLDAAIKKVHEDVRWFV EIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

XP_011656852.2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X2 [Cucumis sativus]5.9e-4998Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWLKTRESLGHPLGV SDPVDLVCPKELLDAAIKKVHEDVRWFV EIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

XP_022156973.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X2 [Momordica charantia]2.2e-4896Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELL+AA+KKVHED RWFVLEIGTEEIPPKDVVDASQQLKT+MLQLLEKHRLSHGNVQAFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

XP_022973889.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X2 [Cucurbita maxima]2.2e-4897Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWLKTRESLGHPLGVVSD VDLVCPKELLDAA+KKVHED RWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

XP_023520987.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucurbita pepo subsp. pepo]2.2e-4897Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWLKTRESLGHPLGVVSD VDLVCPKELLDAA+KKVHED RWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

TrEMBL top hitse value%identityAlignment
A0A6J1DS69 Glycine--tRNA ligase1.1e-4896Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELL+AA+KKVHED RWFVLEIGTEEIPPKDVVDASQQLKT+MLQLLEKHRLSHGNVQAFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

A0A6J1DV61 Glycine--tRNA ligase1.1e-4896Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELL+AA+KKVHED RWFVLEIGTEEIPPKDVVDASQQLKT+MLQLLEKHRLSHGNVQAFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

A0A6J1DWK5 Glycine--tRNA ligase1.1e-4896Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELL+AA+KKVHED RWFVLEIGTEEIPPKDVVDASQQLKT+MLQLLEKHRLSHGNVQAFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

A0A6J1IEH3 Glycine--tRNA ligase1.1e-4897Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWLKTRESLGHPLGVVSD VDLVCPKELLDAA+KKVHED RWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

A0A6J1IFY6 Glycine--tRNA ligase1.1e-4897Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWLKTRESLGHPLGVVSD VDLVCPKELLDAA+KKVHED RWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

SwissProt top hitse value%identityAlignment
B0B923 Glycine--tRNA ligase5.3e-0837Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LAR  A  ++  RESLG PL         V PK++         ED   F+LEIG+EE+P   V    QQL++   +LL  H +++ +++  GTPRRL +
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

C4K460 Glycine--tRNA ligase beta subunit1.7e-0649.02Show/hide
Query:  FVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        F++EIGTEE+PPK +    +    Y+ Q L K  L HG V  F TPRRL V
Subjt:  FVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

P0CE22 Glycine--tRNA ligase5.3e-0837Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LAR  A  ++  RESLG PL         V PK++         ED   F+LEIG+EE+P   V    QQL++   +LL  H +++ +++  GTPRRL +
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

Q8L785 Glycine--tRNA ligase, chloroplastic/mitochondrial 21.4e-3266Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWL TRESLGHPLGV S+PV  VC +  L+   +KV ED R F++EIGTEE+PP+DV++AS+QL+  +L+LLE  RL HG V+AFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

Q9PLC6 Glycine--tRNA ligase2.4e-0838Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LAR  A  ++  RESLG PL         V  K+     I  + +D   F+LEIG+EE+P   V    QQL++   +LL  H +S+ N++  GTPRRL +
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV

Arabidopsis top hitse value%identityAlignment
AT3G48110.1 glycine-tRNA ligases9.8e-3466Show/hide
Query:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV
        LARQCAQLWL TRESLGHPLGV S+PV  VC +  L+   +KV ED R F++EIGTEE+PP+DV++AS+QL+  +L+LLE  RL HG V+AFGTPRRLVV
Subjt:  LARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGACCAAAAAGCCTCTTGTTTAGCTCGTCAGTGTGCACAACTGTGGTTGAAAACTCGAGAATCCCTAGGACATCCTCTTGGTGTTGTTTCTGATCCTGTTGATCT
TGTATGTCCTAAAGAACTTCTGGACGCAGCCATCAAAAAGGTGCATGAAGATGTGAGGTGGTTTGTTCTTGAAATTGGAACTGAAGAAATACCACCGAAAGATGTTGTGG
ATGCAAGCCAACAACTCAAAACATATATGCTGCAGTTACTTGAAAAGCATAGGCTAAGCCATGGTAATGTGCAAGCTTTTGGCACACCTCGCAGGCTAGTGGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGACCAAAAAGCCTCTTGTTTAGCTCGTCAGTGTGCACAACTGTGGTTGAAAACTCGAGAATCCCTAGGACATCCTCTTGGTGTTGTTTCTGATCCTGTTGATCT
TGTATGTCCTAAAGAACTTCTGGACGCAGCCATCAAAAAGGTGCATGAAGATGTGAGGTGGTTTGTTCTTGAAATTGGAACTGAAGAAATACCACCGAAAGATGTTGTGG
ATGCAAGCCAACAACTCAAAACATATATGCTGCAGTTACTTGAAAAGCATAGGCTAAGCCATGGTAATGTGCAAGCTTTTGGCACACCTCGCAGGCTAGTGGTATAG
Protein sequenceShow/hide protein sequence
MRDQKASCLARQCAQLWLKTRESLGHPLGVVSDPVDLVCPKELLDAAIKKVHEDVRWFVLEIGTEEIPPKDVVDASQQLKTYMLQLLEKHRLSHGNVQAFGTPRRLVV