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Spg034547 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034547
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:12086549..12089067
RNA-Seq ExpressionSpg034547
SyntenySpg034547
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.6e-1441.52Show/hide
Query:  STGFSCKPGGSLVFSGGLSILGFNVRRK----IKGSREAQICVVCVRGVSGKIGW-ESRFHFFR----------------PRGNRSSLQTRKLAKT----
        STGFS KP G LVFS  LSIL  +   +    I+  RE +I + C+        W    F F +                PRGNR SLQT +L KT    
Subjt:  STGFSCKPGGSLVFSGGLSILGFNVRRK----IKGSREAQICVVCVRGVSGKIGW-ESRFHFFR----------------PRGNRSSLQTRKLAKT----

Query:  -------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV
                     VEIELPV DTLP SAESS S+S S         + EDD+ WLH +FR K AGG GGGV
Subjt:  -------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.3e-1340.68Show/hide
Query:  STGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGNRSSLQTRKLAKT---------------VEIELPVPDT
        STGFS KPGG LVFS  LSIL      +I  S +    V+ VR +S     +S      PRGNR SLQTR+L KT               V IELPVPD 
Subjt:  STGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGNRSSLQTRKLAKT---------------VEIELPVPDT

Query:  LPTSAESSRSSSSSTFQ-----------------------------EGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV
        LPTSAESS S+SS+  +                              G    +  DD+ WLHA+FR K  GG GGGV
Subjt:  LPTSAESSRSSSSSTFQ-----------------------------EGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]4.8e-1644.67Show/hide
Query:  STGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGNRSSLQTRKLAKT-----------------VEIELPVP
        ST FS KPGG LVFS  LSIL  +   +                         + +  RPRGNR SLQT KL KT                 VEIELPVP
Subjt:  STGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGNRSSLQTRKLAKT-----------------VEIELPVP

Query:  DTLPTSAESSRSSSSSTFQEGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV
        DTLPTSAES  S+S ST        +  DD+ WLHA+FR K AGG GGGV
Subjt:  DTLPTSAESSRSSSSSTFQEGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.9e-1336.79Show/hide
Query:  TGFSCKPGGSLVFSGGLSILGFNVRRK----IKGSREAQICVVCVRGVSGKIGWESRFHFFR--------------PRGNRSSLQTRKLAKT--------
        T  S KPGG LVFS  LSIL  +   +    I+  RE +I      G          F F +              PRGNRSSLQT +L KT        
Subjt:  TGFSCKPGGSLVFSGGLSILGFNVRRK----IKGSREAQICVVCVRGVSGKIGWESRFHFFR--------------PRGNRSSLQTRKLAKT--------

Query:  ---------VEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV
                 VEIELPVPDTLPTSAES  S+SS+  +                          EG    +  DD+ WLH +FR K+AGG GGGV
Subjt:  ---------VEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]6.7e-1834.81Show/hide
Query:  SKHLRERVKEEEEEEFRGFEVEEDRKSSCKASYSRIWSTGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGN
        S+H  ERVK EEEEEFRG  +++  KSSCKA++ RIWSTGFS KP G LVFS  LSIL      +++ S + ++      G SGK  W+       PRGN
Subjt:  SKHLRERVKEEEEEEFRGFEVEEDRKSSCKASYSRIWSTGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGN

Query:  RSSLQTRKLAK-------------------------------------------------------------------------------TVEIELPVPD
        RSSLQT +L K                                                                               ++EIEL VPD
Subjt:  RSSLQTRKLAK-------------------------------------------------------------------------------TVEIELPVPD

Query:  TLPTSAESSRSSSSS----------------TFQEGQWV-----SLEEDDIRWLHAIFRTKLAGGLGGGV
        TLPTSAESS S+SS+                T     W       + E+D+ WLHA+FR K+AGG GGGV
Subjt:  TLPTSAESSRSSSSS----------------TFQEGQWV-----SLEEDDIRWLHAIFRTKLAGGLGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein6.3e-1440.68Show/hide
Query:  STGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGNRSSLQTRKLAKT---------------VEIELPVPDT
        STGFS KPGG LVFS  LSIL      +I  S +    V+ VR +S     +S      PRGNR SLQTR+L KT               V IELPVPD 
Subjt:  STGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGNRSSLQTRKLAKT---------------VEIELPVPDT

Query:  LPTSAESSRSSSSSTFQ-----------------------------EGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV
        LPTSAESS S+SS+  +                              G    +  DD+ WLHA+FR K  GG GGGV
Subjt:  LPTSAESSRSSSSSTFQ-----------------------------EGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV

A0A5A7VIY9 Uncharacterized protein1.4e-1336.79Show/hide
Query:  TGFSCKPGGSLVFSGGLSILGFNVRRK----IKGSREAQICVVCVRGVSGKIGWESRFHFFR--------------PRGNRSSLQTRKLAKT--------
        T  S KPGG LVFS  LSIL  +   +    I+  RE +I      G          F F +              PRGNRSSLQT +L KT        
Subjt:  TGFSCKPGGSLVFSGGLSILGFNVRRK----IKGSREAQICVVCVRGVSGKIGWESRFHFFR--------------PRGNRSSLQTRKLAKT--------

Query:  ---------VEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV
                 VEIELPVPDTLPTSAES  S+SS+  +                          EG    +  DD+ WLH +FR K+AGG GGGV
Subjt:  ---------VEIELPVPDTLPTSAESSRSSSSSTFQ--------------------------EGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.3e-1644.67Show/hide
Query:  STGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGNRSSLQTRKLAKT-----------------VEIELPVP
        ST FS KPGG LVFS  LSIL  +   +                         + +  RPRGNR SLQT KL KT                 VEIELPVP
Subjt:  STGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGNRSSLQTRKLAKT-----------------VEIELPVP

Query:  DTLPTSAESSRSSSSSTFQEGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV
        DTLPTSAES  S+S ST        +  DD+ WLHA+FR K AGG GGGV
Subjt:  DTLPTSAESSRSSSSSTFQEGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.3e-1441.52Show/hide
Query:  STGFSCKPGGSLVFSGGLSILGFNVRRK----IKGSREAQICVVCVRGVSGKIGW-ESRFHFFR----------------PRGNRSSLQTRKLAKT----
        STGFS KP G LVFS  LSIL  +   +    I+  RE +I + C+        W    F F +                PRGNR SLQT +L KT    
Subjt:  STGFSCKPGGSLVFSGGLSILGFNVRRK----IKGSREAQICVVCVRGVSGKIGW-ESRFHFFR----------------PRGNRSSLQTRKLAKT----

Query:  -------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV
                     VEIELPV DTLP SAESS S+S S         + EDD+ WLH +FR K AGG GGGV
Subjt:  -------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDIRWLHAIFRTKLAGGLGGGV

A0A5D3CAC6 Uncharacterized protein3.3e-1834.81Show/hide
Query:  SKHLRERVKEEEEEEFRGFEVEEDRKSSCKASYSRIWSTGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGN
        S+H  ERVK EEEEEFRG  +++  KSSCKA++ RIWSTGFS KP G LVFS  LSIL      +++ S + ++      G SGK  W+       PRGN
Subjt:  SKHLRERVKEEEEEEFRGFEVEEDRKSSCKASYSRIWSTGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQICVVCVRGVSGKIGWESRFHFFRPRGN

Query:  RSSLQTRKLAK-------------------------------------------------------------------------------TVEIELPVPD
        RSSLQT +L K                                                                               ++EIEL VPD
Subjt:  RSSLQTRKLAK-------------------------------------------------------------------------------TVEIELPVPD

Query:  TLPTSAESSRSSSSS----------------TFQEGQWV-----SLEEDDIRWLHAIFRTKLAGGLGGGV
        TLPTSAESS S+SS+                T     W       + E+D+ WLHA+FR K+AGG GGGV
Subjt:  TLPTSAESSRSSSSS----------------TFQEGQWV-----SLEEDDIRWLHAIFRTKLAGGLGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCGAAGGCAGTGTGTAAACCCGAGACTTTCCTTGGGTCATTTATTGTGAAAGTTGGACTTAAGTTGTGTGGTTTCATTGTTGAAGGAAAATGGCAAGCTTTTAG
TTCAAAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCTACAGCAGAATCT
GGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGGTTTGAGCATTCTGGGGTTTAATGTCAGGAGAAAGATAAAGGGTAGTAGAGAAGCTCAA
ATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGGAAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTGGC
TAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAATGGGTATCGTTAG
AGGAGGACGATATTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGCGTTGGGTCAGTTCCGATAGAACTAGCAGAGTACGGTCCAAGT
ATTGTTGAGAGTGAGTCCAGTCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCGAAGGCAGTGTGTAAACCCGAGACTTTCCTTGGGTCATTTATTGTGAAAGTTGGACTTAAGTTGTGTGGTTTCATTGTTGAAGGAAAATGGCAAGCTTTTAG
TTCAAAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCTACAGCAGAATCT
GGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGGTTTGAGCATTCTGGGGTTTAATGTCAGGAGAAAGATAAAGGGTAGTAGAGAAGCTCAA
ATCTGTGTTGTCTGTGTTCGGGGCGTTTCTGGGAAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTGGC
TAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAATGGGTATCGTTAG
AGGAGGACGATATTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGCGTTGGGTCAGTTCCGATAGAACTAGCAGAGTACGGTCCAAGT
ATTGTTGAGAGTGAGTCCAGTCAGGACTAG
Protein sequenceShow/hide protein sequence
MSAKAVCKPETFLGSFIVKVGLKLCGFIVEGKWQAFSSKHLRERVKEEEEEEFRGFEVEEDRKSSCKASYSRIWSTGFSCKPGGSLVFSGGLSILGFNVRRKIKGSREAQ
ICVVCVRGVSGKIGWESRFHFFRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSSTFQEGQWVSLEEDDIRWLHAIFRTKLAGGLGGGVGSVPIELAEYGPS
IVESESSQD