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Spg034556 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034556
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:13587005..13587882
RNA-Seq ExpressionSpg034556
SyntenySpg034556
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.8e-2055Show/hide
Query:  MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESIHI-------------VNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGT+CTQV+IELP+PDTLPTSAESS ++ +TW+ELY ES+H+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESIHI-------------VNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLAGGPG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]7.0e-1655.29Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHI-------------VNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLAGGPGG
        VEIELPVPDTLPTSAESS ++SSTW+ELY ES+H+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHI-------------VNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLAGGPGG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.3e-2158.1Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E +H+   +F +       + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-1749.57Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQ----------EGQHVSLEEDDVRW
        MTEILS RL GT+CTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ES+H+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQ----------EGQHVSLEEDDVRW

Query:  LHAIFRAKLAGGPGG
        LHA+FRAK AGGP G
Subjt:  LHAIFRAKLAGGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.3e-2158.1Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E +H+   +F +       + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.3e-2055Show/hide
Query:  MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESIHI-------------VNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGT+CTQV+IELP+PDTLPTSAESS ++ +TW+ELY ES+H+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESIHI-------------VNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLAGGPG

A0A5A7V9N3 Reverse transcriptase3.4e-1655.29Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHI-------------VNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLAGGPGG
        VEIELPVPDTLPTSAESS ++SSTW+ELY ES+H+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHI-------------VNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5A7VMG9 Reverse transcriptase2.1e-2158.1Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E +H+   +F +       + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

A0A5D3CCC7 DNA/RNA polymerases superfamily protein8.1e-1849.57Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQ----------EGQHVSLEEDDVRW
        MTEILS RL GT+CTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ES+H+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQ----------EGQHVSLEEDDVRW

Query:  LHAIFRAKLAGGPGG
        LHA+FRAK AGGP G
Subjt:  LHAIFRAKLAGGPGG

A0A5D3DX39 Reverse transcriptase2.1e-2158.1Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E +H+   +F +       + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLA

Query:  GGPGG
        GGPGG
Subjt:  GGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTATTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCACGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTATTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCACGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESIHIVNVLFNVQEGQHVSLEEDDVRWLHAIFRAKLAGGPGG