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Spg034557 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034557
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGlycine--tRNA ligase
Genome locationscaffold4:16245043..16246473
RNA-Seq ExpressionSpg034557
SyntenySpg034557
Gene Ontology termsGO:0006426 - glycyl-tRNA aminoacylation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0045995 - regulation of embryonic development (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0004820 - glycine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022973888.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucurbita maxima]1.2e-0897.06Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
        VTVESLCSKQVEKE+EVRGPPVSKAFDDQGNPTK
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
XP_022973889.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X2 [Cucurbita maxima]1.2e-0897.06Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
        VTVESLCSKQVEKE+EVRGPPVSKAFDDQGNPTK
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
XP_023520987.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Cucurbita pepo subsp. pepo]1.2e-0897.06Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
        VTVESLCSKQVEKE+EVRGPPVSKAFDDQGNPTK
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
XP_023520988.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X2 [Cucurbita pepo subsp. pepo]1.2e-0897.06Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
        VTVESLCSKQVEKE+EVRGPPVSKAFDDQGNPTK
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
XP_038874261.1 glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Benincasa hispida]1.5e-0866.67Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTKNKLSIGLCYSSYQCKLKRRFKNK
        VTVESLCSKQVEKE+EVRGPPVSKAFDDQGNPTK        YS  +  L R+   K
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTKNKLSIGLCYSSYQCKLKRRFKNK
TrEMBL top hitse value%identityAlignment
A0A1S4E2Q4 Glycine--tRNA ligase1.6e-0897.06Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
        VTVESLCSKQVEKE EVRGPPVSKAFDDQGNPTK
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
A0A6J1EYL5 Glycine--tRNA ligase1.6e-0894.12Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
        VTVESLCSKQVEKE+EVRGPPVSKAFDD+GNPTK
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
A0A6J1F3I3 Glycine--tRNA ligase1.6e-0894.12Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
        VTVESLCSKQVEKE+EVRGPPVSKAFDD+GNPTK
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
A0A6J1IEH3 Glycine--tRNA ligase5.6e-0997.06Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
        VTVESLCSKQVEKE+EVRGPPVSKAFDDQGNPTK
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
A0A6J1IFY6 Glycine--tRNA ligase5.6e-0997.06Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
        VTVESLCSKQVEKE+EVRGPPVSKAFDDQGNPTK
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTK
SwissProt top hitse value%identityAlignment
Q8L785 Glycine--tRNA ligase, chloroplastic/mitochondrial 23.9e-0752.63Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTKNKLSIGLCYSSYQCKLKRRFKNK
        V V+++ SKQ+E+EVEVRGPP SKAFDD+GNPTK        Y     KL R+   K
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTKNKLSIGLCYSSYQCKLKRRFKNK
Arabidopsis top hitse value%identityAlignment
AT3G48110.1 glycine-tRNA ligases2.8e-0852.63Show/hide
Query:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTKNKLSIGLCYSSYQCKLKRRFKNK
        V V+++ SKQ+E+EVEVRGPP SKAFDD+GNPTK        Y     KL R+   K
Subjt:  VTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTKNKLSIGLCYSSYQCKLKRRFKNK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTATTTTCTAAGAAGAGAGGTGTATTTGAGGGTGTAAGTGAGAAATTTATAGTCCTGGTTTTGAAGCAATTGTTTCCTAGGTGTGTGTCTAAGGTCACGGTTGA
GAGTCTGTGCTCTAAACAGGTAGAGAAAGAGGTTGAGGTCAGAGGACCCCCTGTTTCAAAAGCTTTTGATGACCAAGGAAATCCTACAAAGAATAAGTTAAGCATTGGAC
TTTGTTACAGTTCTTATCAGTGTAAGCTTAAACGAAGGTTTAAAAATAAAAAGAAAATACCGAAGAAGAAAAAGGTGTCGAGGTCAACTTCTGATGCTGACAGTGGCGAC
TTCTTGCAACAAGCGACGACAATGGCGAAGACGACTGGTGACGTCGCCAGAGGTGACAAAGAGAGAAGAAAAGCGTCAACGGAAATCATGAAGAAGAAGAATCGGAGCTG
CTGGTGCTGTTTTCACTTTTCAGAAATCGTGAAGAAGAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCTTATTTTCTAAGAAGAGAGGTGTATTTGAGGGTGTAAGTGAGAAATTTATAGTCCTGGTTTTGAAGCAATTGTTTCCTAGGTGTGTGTCTAAGGTCACGGTTGA
GAGTCTGTGCTCTAAACAGGTAGAGAAAGAGGTTGAGGTCAGAGGACCCCCTGTTTCAAAAGCTTTTGATGACCAAGGAAATCCTACAAAGAATAAGTTAAGCATTGGAC
TTTGTTACAGTTCTTATCAGTGTAAGCTTAAACGAAGGTTTAAAAATAAAAAGAAAATACCGAAGAAGAAAAAGGTGTCGAGGTCAACTTCTGATGCTGACAGTGGCGAC
TTCTTGCAACAAGCGACGACAATGGCGAAGACGACTGGTGACGTCGCCAGAGGTGACAAAGAGAGAAGAAAAGCGTCAACGGAAATCATGAAGAAGAAGAATCGGAGCTG
CTGGTGCTGTTTTCACTTTTCAGAAATCGTGAAGAAGAACTAG
Protein sequenceShow/hide protein sequence
MILFSKKRGVFEGVSEKFIVLVLKQLFPRCVSKVTVESLCSKQVEKEVEVRGPPVSKAFDDQGNPTKNKLSIGLCYSSYQCKLKRRFKNKKKIPKKKKVSRSTSDADSGD
FLQQATTMAKTTGDVARGDKERRKASTEIMKKKNRSCWCCFHFSEIVKKN