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Spg034568 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034568
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold4:13871973..13873895
RNA-Seq ExpressionSpg034568
SyntenySpg034568
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]8.1e-1954.39Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        +YKLNQKLYLVSC VFENEEF VYFINFG VLRKLWVLEVR                                          VEIELP P+ LPTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSTWLVLYIE
        SRS+SSTWL LY E
Subjt:  SRSSSSTWLVLYIE

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]4.6e-2249.06Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWF-FIRLELHRRNQEHSGVYKLNQKLYLVSCR
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF  I L          G     Q   L    
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWF-FIRLELHRRNQEHSGVYKLNQKLYLVSCR

Query:  VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLVLYIES
        +F+     V   N   ++        +VEIELP+PDTLPT AES  S+SSTWL LY ES
Subjt:  VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLVLYIES

KAA0062674.1 uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa]4.9e-1651.3Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V++ NQ LYLVSCRVF +E+F VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTS ES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSTWLVLYIES
        S S+SSTWL LYIES
Subjt:  SRSSSSTWLVLYIES

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.6e-1441.42Show/hide
Query:  EKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFFIRLELHRRNQE-----
        E  K++    TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S   S K     ++   +++      E+H+ NQ+     
Subjt:  EKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFFIRLELHRRNQE-----

Query:  ---HSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSS
            SG + +  +    S +  E ++  ++ ++  SVLR     +  VEIELPVPD LPTSA+SS S+S
Subjt:  ---HSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSS

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]3.5e-2239.55Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRLE---------LH
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +  +E         + 
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRLE---------LH

Query:  RRN---------------------------------------------QEHSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP
        R N                                             +++  V  + Q  Y     V     + V  +N G   R L  ++  +EIEL 
Subjt:  RRN---------------------------------------------QEHSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSAESSRSSSSTWL
        VPDTLPTSAESS S+SSTWL
Subjt:  VPDTLPTSAESSRSSSSTWL

TrEMBL top hitse value%identityAlignment
A0A5A7UFD2 Uncharacterized protein3.9e-1954.39Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        +YKLNQKLYLVSC VFENEEF VYFINFG VLRKLWVLEVR                                          VEIELP P+ LPTSAES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSTWLVLYIE
        SRS+SSTWL LY E
Subjt:  SRSSSSTWLVLYIE

A0A5A7UGD0 Uncharacterized protein2.2e-2249.06Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWF-FIRLELHRRNQEHSGVYKLNQKLYLVSCR
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF  I L          G     Q   L    
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWF-FIRLELHRRNQEHSGVYKLNQKLYLVSCR

Query:  VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLVLYIES
        +F+     V   N   ++        +VEIELP+PDTLPT AES  S+SSTWL LY ES
Subjt:  VFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLVLYIES

A0A5A7V5Z6 Uncharacterized protein2.4e-1651.3Show/hide
Query:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES
        V++ NQ LYLVSCRVF +E+F VYFINFG VLRKLWVLEVR                                          VEIELPVPDT PTS ES
Subjt:  VYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPTSAES

Query:  SRSSSSTWLVLYIES
        S S+SSTWL LYIES
Subjt:  SRSSSSTWLVLYIES

A0A5D3BZ50 Pentatricopeptide repeat-containing protein7.7e-1541.42Show/hide
Query:  EKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFFIRLELHRRNQE-----
        E  K++    TKPTT   IFQ NFISFLHHFP KL EHFEERVK EEEEEFR ++ +   +S   S K     ++   +++      E+H+ NQ+     
Subjt:  EKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFFIRLELHRRNQE-----

Query:  ---HSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSS
            SG + +  +    S +  E ++  ++ ++  SVLR     +  VEIELPVPD LPTSA+SS S+S
Subjt:  ---HSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSS

A0A5D3CAC6 Uncharacterized protein1.7e-2239.55Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRLE---------LH
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +  +E         + 
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFFIRLE---------LH

Query:  RRN---------------------------------------------QEHSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP
        R N                                             +++  V  + Q  Y     V     + V  +N G   R L  ++  +EIEL 
Subjt:  RRN---------------------------------------------QEHSGVYKLNQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELP

Query:  VPDTLPTSAESSRSSSSTWL
        VPDTLPTSAESS S+SSTWL
Subjt:  VPDTLPTSAESSRSSSSTWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGAAAAGAAAAAAAAAAAAAAAAAAAAGAGAAAAGAAAGGAAGTGGAAATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTC
ATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTT
CATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTGGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTG
AATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTGTGGGTGTTGGAAGTTAG
GGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGTGTTGTATATTGAGTCC
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGAAAAGAAAAAAAAAAAAAAAAAAAAGAGAAAAGAAAGGAAGTGGAAATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTC
ATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTT
CATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTATTCGGTTGGAGCTACACAGAAGGAATCAAGAGCATTCTGGGGTGTACAAGTTG
AATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTGTGGGTGTTGGAAGTTAG
GGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGTGTTGTATATTGAGTCC
Protein sequenceShow/hide protein sequence
MEGKEKKKKKKEKRKEVEMDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRLELHRRNQEHSGVYKL
NQKLYLVSCRVFENEEFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWLVLYIES