; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034578 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034578
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCOP9 signalosome complex subunit 7 isoform X2
Genome locationscaffold4:14769980..14772844
RNA-Seq ExpressionSpg034578
SyntenySpg034578
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157037.1 COP9 signalosome complex subunit 7 isoform X4 [Momordica charantia]1.0e-3194.87Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHSVYLD+LRLFAYGTWSDYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

XP_022157039.1 COP9 signalosome complex subunit 7 isoform X6 [Momordica charantia]1.0e-3194.87Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHSVYLD+LRLFAYGTWSDYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

XP_038907171.1 COP9 signalosome complex subunit 7 isoform X1 [Benincasa hispida]9.2e-3398.72Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLD+LRLFAYGTWSDYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

XP_038907172.1 COP9 signalosome complex subunit 7 isoform X2 [Benincasa hispida]9.2e-3398.72Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLD+LRLFAYGTWSDYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

XP_038907173.1 COP9 signalosome complex subunit 7 isoform X3 [Benincasa hispida]9.2e-3398.72Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLD+LRLFAYGTWSDYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

TrEMBL top hitse value%identityAlignment
A0A6J1DS07 COP9 signalosome complex subunit 7 isoform X24.9e-3294.87Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHSVYLD+LRLFAYGTWSDYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

A0A6J1DTH8 COP9 signalosome complex subunit 7 isoform X44.9e-3294.87Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHSVYLD+LRLFAYGTWSDYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

A0A6J1DVC3 COP9 signalosome complex subunit 7 isoform X14.9e-3294.87Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHSVYLD+LRLFAYGTWSDYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

A0A6J1DVC9 COP9 signalosome complex subunit 7 isoform X64.9e-3294.87Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHSVYLD+LRLFAYGTWSDYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

A0A6J1DWS8 COP9 signalosome complex subunit 7 isoform X84.9e-3294.87Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQTEFID FVKQASSLKGS+LASVVTEATSHPSLFAFSEILAVPNV+ELEGTEHSVYLD+LRLFAYGTWSDYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

SwissProt top hitse value%identityAlignment
Q2KI56 COP9 signalosome complex subunit 7b8.1e-0838.67Show/hide
Query:  EQK-QTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDY
        EQK  +  ++QF+  A    GSAL +++++    P ++ F E+L + NV EL    ++ YL +L LFAYGT+ DY
Subjt:  EQK-QTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDY

Q55BD5 COP9 signalosome complex subunit 71.6e-1147.14Show/hide
Query:  IDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYKRE
        + QFV  A S KG A+ S++ +A +HPS+F F E+L +PNV +L+ TE   Y D+L +FAYG++ DYK +
Subjt:  IDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYKRE

Q8BV13 COP9 signalosome complex subunit 7b8.1e-0838.67Show/hide
Query:  EQK-QTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDY
        EQK  +  ++QF+  A    GSAL +++++    P ++ F E+L + NV EL    ++ YL +L LFAYGT+ DY
Subjt:  EQK-QTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDY

Q94JU3 COP9 signalosome complex subunit 74.3e-2573.08Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQ E IDQ VK+AS+ K  AL  ++ EATSHPSLFAFSEILA+PNV +LEGT  SVYLD+LRLFA+GTW DYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

Q9H9Q2 COP9 signalosome complex subunit 7b8.1e-0838.67Show/hide
Query:  EQK-QTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDY
        EQK  +  ++QF+  A    GSAL +++++    P ++ F E+L + NV EL    ++ YL +L LFAYGT+ DY
Subjt:  EQK-QTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDY

Arabidopsis top hitse value%identityAlignment
AT1G02090.1 Proteasome component (PCI) domain protein3.1e-2673.08Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQ E IDQ VK+AS+ K  AL  ++ EATSHPSLFAFSEILA+PNV +LEGT  SVYLD+LRLFA+GTW DYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

AT1G02090.2 Proteasome component (PCI) domain protein3.1e-2673.08Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQ E IDQ VK+AS+ K  AL  ++ EATSHPSLFAFSEILA+PNV +LEGT  SVYLD+LRLFA+GTW DYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK

AT1G02090.3 Proteasome component (PCI) domain protein3.1e-2673.08Show/hide
Query:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK
        MDIEQKQ E IDQ VK+AS+ K  AL  ++ EATSHPSLFAFSEILA+PNV +LEGT  SVYLD+LRLFA+GTW DYK
Subjt:  MDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAGCTCAATCGTGATGCTTCTTGGAGTGACACAACAACCAAAGGAGCAATCACTTGGATCTTTCGAGATGCTGCAGGAGTACCGGTGCGAGCGAGATGTAGAAC
AACAAATCGCAAGTGGAGAGTCTCTTGGCTTGAAGTGTGGGATGCATGCAAAGGTTTGAAGTCTATCCCCTCAAACGCTCCTCCAATTCATGTTAAGCTTGATGCCCTCC
ATGTCGTGAAGTTGCTGCTCGATGAAGAGGAAGATGCTTCAGAACTGTCTAACTTCATAAAGGAAGCCAAGGCCCTAATTGCTACTAGGAGTATTGAGAAGATAGCTCAT
GCTCCAAGAATACATAATAGTATGGCCCAAAGGGCTTCTGCTTTAGATTTATCTGAGAGTTGGGAATCTTCATTTGCTCAAAAAATGGATATTGAGCAGAAGCAAACCGA
GTTCATCGATCAGTTTGTAAAGCAAGCTTCGTCTCTCAAAGGCTCCGCACTTGCGTCTGTTGTCACCGAGGCCACTTCTCACCCCTCCCTCTTCGCTTTCTCTGAAATTC
TTGCCGTTCCCAACGTCGTCGAGCTAGAAGGAACTGAGCATTCTGTATATCTTGACATGCTTCGCTTGTTTGCATATGGAACATGGAGTGATTACAAGAGGGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAGCTCAATCGTGATGCTTCTTGGAGTGACACAACAACCAAAGGAGCAATCACTTGGATCTTTCGAGATGCTGCAGGAGTACCGGTGCGAGCGAGATGTAGAAC
AACAAATCGCAAGTGGAGAGTCTCTTGGCTTGAAGTGTGGGATGCATGCAAAGGTTTGAAGTCTATCCCCTCAAACGCTCCTCCAATTCATGTTAAGCTTGATGCCCTCC
ATGTCGTGAAGTTGCTGCTCGATGAAGAGGAAGATGCTTCAGAACTGTCTAACTTCATAAAGGAAGCCAAGGCCCTAATTGCTACTAGGAGTATTGAGAAGATAGCTCAT
GCTCCAAGAATACATAATAGTATGGCCCAAAGGGCTTCTGCTTTAGATTTATCTGAGAGTTGGGAATCTTCATTTGCTCAAAAAATGGATATTGAGCAGAAGCAAACCGA
GTTCATCGATCAGTTTGTAAAGCAAGCTTCGTCTCTCAAAGGCTCCGCACTTGCGTCTGTTGTCACCGAGGCCACTTCTCACCCCTCCCTCTTCGCTTTCTCTGAAATTC
TTGCCGTTCCCAACGTCGTCGAGCTAGAAGGAACTGAGCATTCTGTATATCTTGACATGCTTCGCTTGTTTGCATATGGAACATGGAGTGATTACAAGAGGGAGTAA
Protein sequenceShow/hide protein sequence
MWKLNRDASWSDTTTKGAITWIFRDAAGVPVRARCRTTNRKWRVSWLEVWDACKGLKSIPSNAPPIHVKLDALHVVKLLLDEEEDASELSNFIKEAKALIATRSIEKIAH
APRIHNSMAQRASALDLSESWESSFAQKMDIEQKQTEFIDQFVKQASSLKGSALASVVTEATSHPSLFAFSEILAVPNVVELEGTEHSVYLDMLRLFAYGTWSDYKRE