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Spg034580 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034580
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:12162486..12164261
RNA-Seq ExpressionSpg034580
SyntenySpg034580
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.7e-2662.5Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHA
        RA+    WPRGNR SLQTGELDKT                 VEIELP+PDTLPTSAESS S+SST LELY ESV  +       GS GI+RGDDVCWLHA
Subjt:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHA

Query:  VFRAKLAGGPGG
        VFRAK  GGPGG
Subjt:  VFRAKLAGGPGG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.1e-2669.39Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGPGG
        PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV  +  F    +V V       GS GIVRGDD+CWLHAVF AK AG PGG
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]8.8e-2660.33Show/hide
Query:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVR
        D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVR
Subjt:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVR

Query:  GDDVCWLHAVFRAKLAGGPGG
        GDDVCWLHAVFRAK  GGPGG
Subjt:  GDDVCWLHAVFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.6e-2765.25Show/hide
Query:  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDD
        L PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRGDD
Subjt:  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDD

Query:  VCWLHAVFRAKLAGGPGG
        VCWLHAVFRAK  GGPGG
Subjt:  VCWLHAVFRAKLAGGPGG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.7e-2662.5Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHA
        RA+    WPRGNR SLQTGELDKT                 VEIELP+PDTLPTSAESS S+SST LELY ESV  +       GS GI+RGDDVCWLHA
Subjt:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHA

Query:  VFRAKLAGGPGG
        VFRAK  GGPGG
Subjt:  VFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase3.3e-2662.5Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHA
        RA+    WPRGNR SLQTGELDKT                 VEIELP+PDTLPTSAESS S+SST LELY ESV  +       GS GI+RGDDVCWLHA
Subjt:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHA

Query:  VFRAKLAGGPGG
        VFRAK  GGPGG
Subjt:  VFRAKLAGGPGG

A0A5A7UAH6 CCHC-type domain-containing protein2.5e-2669.39Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGPGG
        PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV  +  F    +V V       GS GIVRGDD+CWLHAVF AK AG PGG
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7V9N3 Reverse transcriptase4.2e-2660.33Show/hide
Query:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVR
        D+  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVR
Subjt:  DLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVR

Query:  GDDVCWLHAVFRAKLAGGPGG
        GDDVCWLHAVFRAK  GGPGG
Subjt:  GDDVCWLHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein7.7e-2865.25Show/hide
Query:  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDD
        L PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRGDD
Subjt:  LWPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDD

Query:  VCWLHAVFRAKLAGGPGG
        VCWLHAVFRAK  GGPGG
Subjt:  VCWLHAVFRAKLAGGPGG

A0A5D3D150 Reverse transcriptase3.3e-2662.5Show/hide
Query:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHA
        RA+    WPRGNR SLQTGELDKT                 VEIELP+PDTLPTSAESS S+SST LELY ESV  +       GS GI+RGDDVCWLHA
Subjt:  RAKQEDLWPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHA

Query:  VFRAKLAGGPGG
        VFRAK  GGPGG
Subjt:  VFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCT
CCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTT
CAGTAGGGTCGACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCT
CCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTT
CAGTAGGGTCGACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG