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Spg034583 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034583
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:14600775..14602548
RNA-Seq ExpressionSpg034583
SyntenySpg034583
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]5.8e-0829.14Show/hide
Query:  ELVAAISWAIWIDRNKKVYNQSIPPESIRSIWVIDYLKIYKDA------------------------SSKAVDQSDHA----STGVGVVIRIQLGEIIGA
        +L A   WAIW DRN   +  S+   ++R  W+  Y + Y  A                         S     SD A    STG+G++IR   G ++ A
Subjt:  ELVAAISWAIWIDRNKKVYNQSIPPESIRSIWVIDYLKIYKDA------------------------SSKAVDQSDHA----STGVGVVIRIQLGEIIGA

Query:  KSSFVKLDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEAGCALAINLVPDPL
        KS F+ +      AE++ I E +  A  +  ++L+VE+ C  AI LV   L
Subjt:  KSSFVKLDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEAGCALAINLVPDPL

XP_023872147.1 uncharacterized protein LOC111984763 [Quercus suber]6.5e-0728.57Show/hide
Query:  MAEIELVAAISWAIWIDRNKKVY-NQSIPP-------ESIRSIWVIDYLKIYKDASSKAVDQSDHASTGVGVVIRIQLGEIIGAKSSFVKLDYKAPLAEV
        + ++EL  AI+WA+W +RN+ V+    +PP        +  SIW +   +++K     A  +SD  S+ +GVVIR  LG+++ A    ++  +   L E+
Subjt:  MAEIELVAAISWAIWIDRNKKVY-NQSIPP-------ESIRSIWVIDYLKIYKDASSKAVDQSDHASTGVGVVIRIQLGEIIGAKSSFVKLDYKAPLAEV

Query:  KAIYEGVCFAKDQGCSKLIVEAGCALAINLVPD
         A+ +GV  A++     +IVE+  +  I  + +
Subjt:  KAIYEGVCFAKDQGCSKLIVEAGCALAINLVPD

XP_024315667.1 uncharacterized protein LOC112271019 [Brachypodium distachyon]4.6e-0530.08Show/hide
Query:  ELVAAISWAIWIDRNKKVYNQSIPPE-----SIRSIWVIDYLKIYKDAS---------------SKAVDQS---DHASTGVGVVIRIQLGEIIGAKSSFV
        EL A   W IW +R + ++ + IPP      SI+++ V++Y++ Y   S                  VD S   D      G VIR   G  + A +S +
Subjt:  ELVAAISWAIWIDRNKKVYNQSIPPE-----SIRSIWVIDYLKIYKDAS---------------SKAVDQS---DHASTGVGVVIRIQLGEIIGAKSSFV

Query:  KLDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEA
         + Y A +AE  A++ G+ FAK  GCS L++ +
Subjt:  KLDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEA

XP_030970300.1 uncharacterized protein LOC115990627 [Quercus lobata]5.5e-0627.64Show/hide
Query:  EIELVAAISWAIWIDRNKKVYNQSIPPESIRSIWVIDYLKIYKDASSKAVDQSDHASTGVGVVIRIQLGEIIGAKSSFVKLDYKAPLAEVKAIYEGVCFA
        ++EL  A++W+IW +RN+ ++  S  P           L  +K A   AV   D  ++ +GVVIR  +GE++ A    + + +   ++E  A+ +GV  A
Subjt:  EIELVAAISWAIWIDRNKKVYNQSIPPESIRSIWVIDYLKIYKDASSKAVDQSDHASTGVGVVIRIQLGEIIGAKSSFVKLDYKAPLAEVKAIYEGVCFA

Query:  KDQGCSKLIVEAGCALAINLVPD
         +   S  I E+     I  + D
Subjt:  KDQGCSKLIVEAGCALAINLVPD

XP_031091120.1 uncharacterized protein LOC115996119 [Ipomoea triloba]1.3e-0428.69Show/hide
Query:  AISWAIWIDRNKKVYN------QSIPPESIRSIWVID-YLKIYKDASSKAVDQSDHASTGVGVVIRIQLGEIIGAKSSFVKLDYKAPLAEVKAIYEGVCF
        AI W +W  RN  +++        +PP    S+ V D ++K + DA+      S+HA    G++I    G  + AK+ +++      LAE  A+ E + +
Subjt:  AISWAIWIDRNKKVYN------QSIPPESIRSIWVID-YLKIYKDASSKAVDQSDHASTGVGVVIRIQLGEIIGAKSSFVKLDYKAPLAEVKAIYEGVCF

Query:  AKDQGCSKLIVEAGCALAINLV
        AKD+ CSK+++ + C    N +
Subjt:  AKDQGCSKLIVEAGCALAINLV

TrEMBL top hitse value%identityAlignment
A0A0Q3GGJ7 RNase H domain-containing protein2.2e-0530.08Show/hide
Query:  ELVAAISWAIWIDRNKKVYNQSIPPE-----SIRSIWVIDYLKIYKDAS---------------SKAVDQS---DHASTGVGVVIRIQLGEIIGAKSSFV
        EL A   W IW +R + ++ + IPP      SI+++ V++Y++ Y   S                  VD S   D      G VIR   G  + A +S +
Subjt:  ELVAAISWAIWIDRNKKVYNQSIPPE-----SIRSIWVIDYLKIYKDAS---------------SKAVDQS---DHASTGVGVVIRIQLGEIIGAKSSFV

Query:  KLDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEA
         + Y A +AE  A++ G+ FAK  GCS L++ +
Subjt:  KLDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEA

A0A2K2CVF0 RNase H domain-containing protein1.5e-0426.52Show/hide
Query:  ELVAAISWAIWIDRNKKVYNQSI--PPESIRSIWVIDYLKIYKDASSKAVDQ--------------------SDHASTGVGVVIRIQLGEIIGAKSSFVK
        EL A   W IW +R + +  + +  PP S  SI  +    +  ++ S  + +                     D      G VIR   G  +GA +SF+ 
Subjt:  ELVAAISWAIWIDRNKKVYNQSI--PPESIRSIWVIDYLKIYKDASSKAVDQ--------------------SDHASTGVGVVIRIQLGEIIGAKSSFVK

Query:  LDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEA
        + Y A  AE  A++ G+  AK+ GCS L++ +
Subjt:  LDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEA

A0A6J1BQ49 uncharacterized protein LOC1110047862.8e-0829.14Show/hide
Query:  ELVAAISWAIWIDRNKKVYNQSIPPESIRSIWVIDYLKIYKDA------------------------SSKAVDQSDHA----STGVGVVIRIQLGEIIGA
        +L A   WAIW DRN   +  S+   ++R  W+  Y + Y  A                         S     SD A    STG+G++IR   G ++ A
Subjt:  ELVAAISWAIWIDRNKKVYNQSIPPESIRSIWVIDYLKIYKDA------------------------SSKAVDQSDHA----STGVGVVIRIQLGEIIGA

Query:  KSSFVKLDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEAGCALAINLVPDPL
        KS F+ +      AE++ I E +  A  +  ++L+VE+ C  AI LV   L
Subjt:  KSSFVKLDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEAGCALAINLVPDPL

A0A7N2RE64 RNase H domain-containing protein2.9e-0526.71Show/hide
Query:  MAEIELVAAISWAIWIDRNKKVYNQSIPPESIRSIWVIDYL----------KIYKD---------------ASSKAVDQSDHASTGVGVVIRIQLGEIIG
        M ++ L+   +W IW +RN+  + +S  P S+   W  + L          + +KD               A++     +    TG+GVVIR   GE++ 
Subjt:  MAEIELVAAISWAIWIDRNKKVYNQSIPPESIRSIWVIDYL----------KIYKD---------------ASSKAVDQSDHASTGVGVVIRIQLGEIIG

Query:  AKSSFVKLDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEAGCALAIN
        A S  +K    A   E KA+ EGV FA + G    + E+     +N
Subjt:  AKSSFVKLDYKAPLAEVKAIYEGVCFAKDQGCSKLIVEAGCALAIN

A0A803P9C5 Uncharacterized protein5.9e-0625.17Show/hide
Query:  EIELVAAISWAIWIDRNKKVYNQSIPPESIRSI------WVIDYLKIYKDASSKAVDQSDHASTGVGVVIRIQLGEIIGAKSSFVKLDYKAPLAEVKAIY
        ++E +  + W IW +RN  ++  S P   +R+       W       YK     A+D S  +  G+GV++R   G+++GA S     ++K+   E KA++
Subjt:  EIELVAAISWAIWIDRNKKVYNQSIPPESIRSI------WVIDYLKIYKDASSKAVDQSDHASTGVGVVIRIQLGEIIGAKSSFVKLDYKAPLAEVKAIY

Query:  EGVCFAKDQGCSKLIVEAGCALAINLVPDPLPHSIPLYLALAD
         G+ +AK        VE  C + +N +   + H+   +  ++D
Subjt:  EGVCFAKDQGCSKLIVEAGCALAINLVPDPLPHSIPLYLALAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAAATCGAGCTCGTAGCTGCCATAAGCTGGGCCATCTGGATTGATAGAAATAAGAAAGTCTACAATCAATCAATTCCGCCAGAATCTATTCGAAGCATATGGGT
GATAGACTATCTTAAAATATACAAAGATGCAAGTTCAAAAGCTGTGGACCAATCGGACCATGCTTCGACTGGAGTTGGTGTAGTAATCAGGATCCAGCTGGGAGAGATAA
TTGGAGCAAAATCATCATTTGTGAAACTGGATTACAAAGCTCCTTTGGCTGAAGTTAAAGCTATCTACGAAGGCGTTTGTTTTGCCAAAGATCAGGGCTGCTCGAAATTG
ATCGTGGAAGCTGGTTGTGCCCTAGCAATCAACTTAGTGCCCGATCCTCTCCCTCATTCAATCCCTCTCTATCTCGCTCTCGCTGATTCGAGCCCTAATCTAGAAGAAAG
AGATTGCCGCTTGAGGTTGCTGAAGCGTGAATCCGTAGTTGCTGGGGCATGGGGTCGCGAATCCGATGTTGCTAGAGCGTGGGTACTGGTCGGAGATCGTAGACGGAGGT
TGCTGAAGTGCGAATCTGACGTTGGTGGAGCGTGGGTACTGGTCGGAGATCGCTGTCGAAGGTTGAGGAGCATGGGTACTGGAGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAAATCGAGCTCGTAGCTGCCATAAGCTGGGCCATCTGGATTGATAGAAATAAGAAAGTCTACAATCAATCAATTCCGCCAGAATCTATTCGAAGCATATGGGT
GATAGACTATCTTAAAATATACAAAGATGCAAGTTCAAAAGCTGTGGACCAATCGGACCATGCTTCGACTGGAGTTGGTGTAGTAATCAGGATCCAGCTGGGAGAGATAA
TTGGAGCAAAATCATCATTTGTGAAACTGGATTACAAAGCTCCTTTGGCTGAAGTTAAAGCTATCTACGAAGGCGTTTGTTTTGCCAAAGATCAGGGCTGCTCGAAATTG
ATCGTGGAAGCTGGTTGTGCCCTAGCAATCAACTTAGTGCCCGATCCTCTCCCTCATTCAATCCCTCTCTATCTCGCTCTCGCTGATTCGAGCCCTAATCTAGAAGAAAG
AGATTGCCGCTTGAGGTTGCTGAAGCGTGAATCCGTAGTTGCTGGGGCATGGGGTCGCGAATCCGATGTTGCTAGAGCGTGGGTACTGGTCGGAGATCGTAGACGGAGGT
TGCTGAAGTGCGAATCTGACGTTGGTGGAGCGTGGGTACTGGTCGGAGATCGCTGTCGAAGGTTGAGGAGCATGGGTACTGGAGCGTGA
Protein sequenceShow/hide protein sequence
MAEIELVAAISWAIWIDRNKKVYNQSIPPESIRSIWVIDYLKIYKDASSKAVDQSDHASTGVGVVIRIQLGEIIGAKSSFVKLDYKAPLAEVKAIYEGVCFAKDQGCSKL
IVEAGCALAINLVPDPLPHSIPLYLALADSSPNLEERDCRLRLLKRESVVAGAWGRESDVARAWVLVGDRRRRLLKCESDVGGAWVLVGDRCRRLRSMGTGA