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Spg034622 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034622
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold4:12169583..12171872
RNA-Seq ExpressionSpg034622
SyntenySpg034622
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.6e-2576.74Show/hide
Query:  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        LSTLSVLRDND VVEIELP+PDTLPTSAESS S+SSTLLELY ESV  +       GS GI+RGDDVCWLHAVFRAK  GGPGG V
Subjt:  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-2762.4Show/hide
Query:  ILVGNLVFISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESV--------------TFQTRFNVSVGSTGIVRGD
        +L GN   + SG +      PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SST LELY ESV                   F+V VGSTGIVRGD
Subjt:  ILVGNLVFISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESV--------------TFQTRFNVSVGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGGDVGSVQ
        DVCWLHAVFRAK  GGPGG V +++
Subjt:  DVCWLHAVFRAKLAGGPGGDVGSVQ
TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.6e-2576.74Show/hide
Query:  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        LSTLSVLRDND VVEIELP+PDTLPTSAESS S+SSTLLELY ESV  +       GS GI+RGDDVCWLHAVFRAK  GGPGG V
Subjt:  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-2570.41Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SST LELY ESV  +  F               GS GIVRGDDVCWLHA+FRAK AGGPGG V
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.7e-2762.4Show/hide
Query:  ILVGNLVFISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESV--------------TFQTRFNVSVGSTGIVRGD
        +L GN   + SG +      PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SST LELY ESV                   F+V VGSTGIVRGD
Subjt:  ILVGNLVFISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESV--------------TFQTRFNVSVGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGGDVGSVQ
        DVCWLHAVFRAK  GGPGG V +++
Subjt:  DVCWLHAVFRAKLAGGPGGDVGSVQ
TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.7e-2570.41Show/hide
Query:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SST LELY ESV  +  F               GS GIVRGDDVCWLHA+FRAK AGGPGG V
Subjt:  PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
A0A5A7TKT0 Reverse transcriptase1.3e-2576.74Show/hide
Query:  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        LSTLSVLRDND VVEIELP+PDTLPTSAESS S+SSTLLELY ESV  +       GS GI+RGDDVCWLHAVFRAK  GGPGG V
Subjt:  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
A0A5A7V9N3 Reverse transcriptase8.0e-2862.4Show/hide
Query:  ILVGNLVFISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESV--------------TFQTRFNVSVGSTGIVRGD
        +L GN   + SG +      PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SST LELY ESV                   F+V VGSTGIVRGD
Subjt:  ILVGNLVFISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESV--------------TFQTRFNVSVGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGGDVGSVQ
        DVCWLHAVFRAK  GGPGG V +++
Subjt:  DVCWLHAVFRAKLAGGPGGDVGSVQ
A0A5D3D150 Reverse transcriptase1.3e-2576.74Show/hide
Query:  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
        LSTLSVLRDND VVEIELP+PDTLPTSAESS S+SSTLLELY ESV  +       GS GI+RGDDVCWLHAVFRAK  GGPGG V
Subjt:  LSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDV
A0A5D3DSY7 Putative Retrotransposon protein8.0e-2862.4Show/hide
Query:  ILVGNLVFISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESV--------------TFQTRFNVSVGSTGIVRGD
        +L GN   + SG +      PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SST LELY ESV                   F+V VGSTGIVRGD
Subjt:  ILVGNLVFISSGYI------PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTLLELYIESV--------------TFQTRFNVSVGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGGDVGSVQ
        DVCWLHAVFRAK  GGPGG V +++
Subjt:  DVCWLHAVFRAKLAGGPGGDVGSVQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCAAGAAGGGCACCACCGACTACCATTCTTATCAGCCCATTATCAGCCTCATTTCTCATCCTTTTCCACTAAAACTTTCAGAGCACTTCAAGGAGAGAGTGAA
GGAGGAGGAAGAAGAAGAATTTCAGAAGCTCGAATCTGTGTTGTCTGACTTCGGGGCATTTCTGGACATATTGGTTGGGAATCTAGTTTTCATTTCTTCAGGTTATATTC
CGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGT
ACGTTGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCGACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGT
CTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTCGAGAGTGAGTCCAGTCGGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCAAGAAGGGCACCACCGACTACCATTCTTATCAGCCCATTATCAGCCTCATTTCTCATCCTTTTCCACTAAAACTTTCAGAGCACTTCAAGGAGAGAGTGAA
GGAGGAGGAAGAAGAAGAATTTCAGAAGCTCGAATCTGTGTTGTCTGACTTCGGGGCATTTCTGGACATATTGGTTGGGAATCTAGTTTTCATTTCTTCAGGTTATATTC
CGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGT
ACGTTGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCGACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGT
CTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTCGAGAGTGAGTCCAGTCGGGACTAG
Protein sequenceShow/hide protein sequence
MDSKKGTTDYHSYQPIISLISHPFPLKLSEHFKERVKEEEEEEFQKLESVLSDFGAFLDILVGNLVFISSGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSS
TLLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGDVGSVQIELAEYGPSIVESESSRD