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Spg034623 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034623
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationscaffold4:13539469..13543099
RNA-Seq ExpressionSpg034623
SyntenySpg034623
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG68750.1 hypothetical protein EZV62_003685 [Acer yangbiense]8.6e-1653.09Show/hide
Query:  MTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYE
        +   ++  L+ E + ++QYL Q K++ DKF+AIGEPLSY DHLGY+LEGLG EY+ F TSI+NR ++ S+ DV SL L +E
Subjt:  MTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYE

XP_022148871.1 uncharacterized protein LOC111017438 [Momordica charantia]2.1e-1451.72Show/hide
Query:  NVEAKEMTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYE
        N + KE+ + K + L      VSQYLA+IK++  K S+IGEP+S +DH+ YI+EGLG EYN F TSIQNR++  +L DVR+L L Y+
Subjt:  NVEAKEMTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYE

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]5.4e-1859.09Show/hide
Query:  TEQKVNRLETEL-------SLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEA
        T  ++  L+TEL       S VSQYLA+IK++ADKF+A+GEPLSY DHL ++L+GLG+EYN F TSI NR +  SL DVRSL L YEA
Subjt:  TEQKVNRLETEL-------SLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEA

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]7.5e-2064.1Show/hide
Query:  KVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEA
        ++ +++ +   VSQYLAQIKDV D F+AIGEPLSY DHL YILEGLG+EYNPF +SI NRTNR S+ADVR+L + Y++
Subjt:  KVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEA

XP_038891713.1 uncharacterized protein LOC120081111 [Benincasa hispida]7.3e-1556.41Show/hide
Query:  KVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEA
        ++ ++  +   +SQYL+QIKDVADKFS +GE +SY DHL +IL+GLG+EYN F TSIQN  +  S+ DV SL L YEA
Subjt:  KVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEA

TrEMBL top hitse value%identityAlignment
A0A5C7I9Y1 Uncharacterized protein6.7e-1451.25Show/hide
Query:  EQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEA
        + ++  L  E + ++QYL Q KD+ADKF+ +GEPLSY  HLGY  EGLG EY+ F TSI+N  +R S+ DV SL L +E+
Subjt:  EQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEA

A0A5C7IHH0 Uncharacterized protein4.2e-1653.09Show/hide
Query:  MTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYE
        +   ++  L+ E + ++QYL Q K++ DKF+AIGEPLSY DHLGY+LEGLG EY+ F TSI+NR ++ S+ DV SL L +E
Subjt:  MTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYE

A0A6J1D6N7 uncharacterized protein LOC1110174381.0e-1451.72Show/hide
Query:  NVEAKEMTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYE
        N + KE+ + K + L      VSQYLA+IK++  K S+IGEP+S +DH+ YI+EGLG EYN F TSIQNR++  +L DVR+L L Y+
Subjt:  NVEAKEMTEQKVNRLETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYE

A0A6J1DQX7 uncharacterized protein LOC1110223152.6e-1859.09Show/hide
Query:  TEQKVNRLETEL-------SLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEA
        T  ++  L+TEL       S VSQYLA+IK++ADKF+A+GEPLSY DHL ++L+GLG+EYN F TSI NR +  SL DVRSL L YEA
Subjt:  TEQKVNRLETEL-------SLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEA

A5BPS3 Uncharacterized protein1.8e-1138.97Show/hide
Query:  SKPRAVLTHPACSFID----DIPALVKFLDVAQTQNVEAKEMTEQKVNRL---------------ETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLG
        + P+ +   P  S  D    + P   KFLD AQ Q +    +  +++NRL               + E   +S+YLA+IK+V DK+SA+GEPLSY D L 
Subjt:  SKPRAVLTHPACSFID----DIPALVKFLDVAQTQNVEAKEMTEQKVNRL---------------ETELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLG

Query:  YILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVY
        Y L GL  EY+ F TSI NR+++ SL +V SL   Y
Subjt:  YILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGCATTAATCTGACAAGAGGTTTAACAGCGTGCACGAACAACGTCGCAACCAGCAGCCTCCGAGCGCGCCAGCTACCTGCTCCGCCTTGTATAGTGCCCATCTG
TAGCATGCTTCATCCGGAAACTAACGCCCCACACTGCCCTCTACTTAGCGCACCTTGCTCTGCACACAGTGATTGTAGCAAGCCTCGCGCAGTGCTCACCCACCCAGCGT
GCTCTTTCATTGACGATATCCCTGCTCTTGTGAAGTTTTTGGATGTTGCTCAAACTCAGAATGTTGAAGCAAAAGAAATGACAGAACAGAAAGTAAACAGATTAGAAACA
GAGTTATCATTGGTCTCTCAATACCTTGCTCAAATTAAGGATGTAGCAGACAAGTTCTCAGCCATTGGTGAACCCTTGTCCTATGAAGATCATTTGGGTTACATTCTAGA
GGGCCTTGGCACTGAATATAACCCCTTTGCTACCTCTATCCAAAATCGAACCAATCGTCATTCTCTTGCTGATGTCCGTAGCCTATTCCTAGTCTATGAAGCTGATAGGA
CCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGCATTAATCTGACAAGAGGTTTAACAGCGTGCACGAACAACGTCGCAACCAGCAGCCTCCGAGCGCGCCAGCTACCTGCTCCGCCTTGTATAGTGCCCATCTG
TAGCATGCTTCATCCGGAAACTAACGCCCCACACTGCCCTCTACTTAGCGCACCTTGCTCTGCACACAGTGATTGTAGCAAGCCTCGCGCAGTGCTCACCCACCCAGCGT
GCTCTTTCATTGACGATATCCCTGCTCTTGTGAAGTTTTTGGATGTTGCTCAAACTCAGAATGTTGAAGCAAAAGAAATGACAGAACAGAAAGTAAACAGATTAGAAACA
GAGTTATCATTGGTCTCTCAATACCTTGCTCAAATTAAGGATGTAGCAGACAAGTTCTCAGCCATTGGTGAACCCTTGTCCTATGAAGATCATTTGGGTTACATTCTAGA
GGGCCTTGGCACTGAATATAACCCCTTTGCTACCTCTATCCAAAATCGAACCAATCGTCATTCTCTTGCTGATGTCCGTAGCCTATTCCTAGTCTATGAAGCTGATAGGA
CCTAA
Protein sequenceShow/hide protein sequence
MSGINLTRGLTACTNNVATSSLRARQLPAPPCIVPICSMLHPETNAPHCPLLSAPCSAHSDCSKPRAVLTHPACSFIDDIPALVKFLDVAQTQNVEAKEMTEQKVNRLET
ELSLVSQYLAQIKDVADKFSAIGEPLSYEDHLGYILEGLGTEYNPFATSIQNRTNRHSLADVRSLFLVYEADRT