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Spg034625 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034625
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold4:15889410..15891218
RNA-Seq ExpressionSpg034625
SyntenySpg034625
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]1.6e-3153.85Show/hide
Query:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIKK---KLLNEGYSL---PTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVE
        SG  EASTS AK  ++ +E  SN PILRYVPLS+ KKGESPF E  + +K    ++L E +++     T+KGLGYKSPEP+ I R+GK KV D+NHITV+
Subjt:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIKK---KLLNEGYSL---PTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVE

Query:  EVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF
        EVD  + KE   QRTS F RI P VARA VF+RLS+ EA+ +  Q T++  R S F
Subjt:  EVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]1.0e-3347.67Show/hide
Query:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK-------------------------------------------KKLLNEG
        SG  EAST+ AK  ++ DEK SN PILRYVPLS+RKKGESPF E  + +K                                           KKLL EG
Subjt:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK-------------------------------------------KKLLNEG

Query:  YSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF
        + +P +RKGLGYKSPEP+ I R+GK KV D NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ EA+ +  Q T++  R S F
Subjt:  YSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.4e-3630.62Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKNKKQSYARKESRLFRDNKRKAKSQKKKGKKKPRRSKPIVEESEDFFCLPQPITLAEYFPRRFLDDSQGKALETVT---
        SQEK   IE+++EGWT+V RRK +K +  +KESRL+ + +R  K+QK K KKK R+ K + E+ +DF    + +TLA++FP RFL D Q +    V    
Subjt:  SQEKYVSIEDENEGWTLVVRRKNKKQSYARKESRLFRDNKRKAKSQKKKGKKKPRRSKPIVEESEDFFCLPQPITLAEYFPRRFLDDSQGKALETVT---

Query:  --------------CHIVDMVEDD----------------------------------------------------------------------------
                      C  +D  ++D                                                                            
Subjt:  --------------CHIVDMVEDD----------------------------------------------------------------------------

Query:  -----------DVPASS-----------------------SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK----------
                   +VP  +                       SG  EASTS AK  +V DEK SN PILRYVPLS+RKKGESPF E  + +K          
Subjt:  -----------DVPASS-----------------------SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK----------

Query:  -------------------------------------------------------------------KKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKA
                                                                           KKLL EG+++P +RKGLGYK PEP+ I R+GK 
Subjt:  -------------------------------------------------------------------KKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKA

Query:  KVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF
        KV D+NHITV+EVD  +EKE   QRTS F R+ P VARA VF+RLS+ EAE +  Q T+S  R S F
Subjt:  KVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]1.1e-3245.32Show/hide
Query:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK--------------------------------------------------
        SG  EAST+ AK  ++ DEK SN PILRYVPLS+RKKGESPF E  + +K                                                  
Subjt:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK--------------------------------------------------

Query:  ---KKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRP
           KKLL EG+ +P +RKGLGYKSPEP+ I R+GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ EAE +  Q T++  + 
Subjt:  ---KKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRP

Query:  SVF
        S F
Subjt:  SVF

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]4.7e-3138.43Show/hide
Query:  DDSQGKALETVTCHIVDMVEDDDVPASSSGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK----------------------
        D+SQ K+L T   H       +     +SG GEA TS  K  ++KDE  +N+P+LRYVPLS+RKKGESPF E  + +K                      
Subjt:  DDSQGKALETVTCHIVDMVEDDDVPASSSGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK----------------------

Query:  -------------------------------------------------------KKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEE
                                                               KKLL EG+S+P +RKGLGYKSPEP+ I ++GK KV D NHIT+EE
Subjt:  -------------------------------------------------------KKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEE

Query:  VDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF
         D++  KE  +QR SVF RIRP VAR +VF+RLS+ EAE E  Q   S  R SVF
Subjt:  VDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]6.2e-0734.91Show/hide
Query:  IEDENEGWTLVVRRKNKKQSYARKESRLFRDNKRKAKSQKKKGKKKPRRSKPIVEESEDFFCLPQPITLAEYFPRRFLDDSQGKALETVTCHIVDMVEDD
        IE+++EGW +V  RK ++    ++ESR +++ +R  K+QK K KKK  + K +  E  +F    + +TLA++ P+ FL D Q +  E V CH ++  E++
Subjt:  IEDENEGWTLVVRRKNKKQSYARKESRLFRDNKRKAKSQKKKGKKKPRRSKPIVEESEDFFCLPQPITLAEYFPRRFLDDSQGKALETVTCHIVDMVEDD

Query:  DVPASS
         +P  S
Subjt:  DVPASS

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein2.3e-3151.18Show/hide
Query:  PASSSGT-----GEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK-------------KKLLNEGYSLPTTRKGLGYKSPEPVCII
        P  S GT     GEASTS  K  ++ DEK SN  ILRYVPLS+R+KGESPF +  + +K             KKLL EG+ +P +RKG GYKSPEP+ II
Subjt:  PASSSGT-----GEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK-------------KKLLNEGYSLPTTRKGLGYKSPEPVCII

Query:  RRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPS
        R+ K KV D+NHITV EVD  +EKE   QR S F +IRP V R  VF+RLSV + E +  Q T+S  + S
Subjt:  RRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPS

A0A5A7UMY2 Reverse transcriptase domain-containing protein4.9e-3447.67Show/hide
Query:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK-------------------------------------------KKLLNEG
        SG  EAST+ AK  ++ DEK SN PILRYVPLS+RKKGESPF E  + +K                                           KKLL EG
Subjt:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK-------------------------------------------KKLLNEG

Query:  YSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF
        + +P +RKGLGYKSPEP+ I R+GK KV D NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ EA+ +  Q T++  R S F
Subjt:  YSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF

A0A5D3BY54 Ty3-gypsy retrotransposon protein3.1e-3630.62Show/hide
Query:  SQEKYVSIEDENEGWTLVVRRKNKKQSYARKESRLFRDNKRKAKSQKKKGKKKPRRSKPIVEESEDFFCLPQPITLAEYFPRRFLDDSQGKALETVT---
        SQEK   IE+++EGWT+V RRK +K +  +KESRL+ + +R  K+QK K KKK R+ K + E+ +DF    + +TLA++FP RFL D Q +    V    
Subjt:  SQEKYVSIEDENEGWTLVVRRKNKKQSYARKESRLFRDNKRKAKSQKKKGKKKPRRSKPIVEESEDFFCLPQPITLAEYFPRRFLDDSQGKALETVT---

Query:  --------------CHIVDMVEDD----------------------------------------------------------------------------
                      C  +D  ++D                                                                            
Subjt:  --------------CHIVDMVEDD----------------------------------------------------------------------------

Query:  -----------DVPASS-----------------------SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK----------
                   +VP  +                       SG  EASTS AK  +V DEK SN PILRYVPLS+RKKGESPF E  + +K          
Subjt:  -----------DVPASS-----------------------SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK----------

Query:  -------------------------------------------------------------------KKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKA
                                                                           KKLL EG+++P +RKGLGYK PEP+ I R+GK 
Subjt:  -------------------------------------------------------------------KKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKA

Query:  KVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF
        KV D+NHITV+EVD  +EKE   QRTS F R+ P VARA VF+RLS+ EAE +  Q T+S  R S F
Subjt:  KVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF

A0A5D3C8N8 Ribonuclease H7.8e-3253.85Show/hide
Query:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIKK---KLLNEGYSL---PTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVE
        SG  EASTS AK  ++ +E  SN PILRYVPLS+ KKGESPF E  + +K    ++L E +++     T+KGLGYKSPEP+ I R+GK KV D+NHITV+
Subjt:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIKK---KLLNEGYSL---PTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVE

Query:  EVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF
        EVD  + KE   QRTS F RI P VARA VF+RLS+ EA+ +  Q T++  R S F
Subjt:  EVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF

A0A5D3DXC7 Reverse transcriptase domain-containing protein5.4e-3345.32Show/hide
Query:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK--------------------------------------------------
        SG  EAST+ AK  ++ DEK SN PILRYVPLS+RKKGESPF E  + +K                                                  
Subjt:  SGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIK--------------------------------------------------

Query:  ---KKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRP
           KKLL EG+ +P +RKGLGYKSPEP+ I R+GK KV D+NHITV+EVD  +EKE  +QRTS F RI P VARA VF+RLS+ EAE +  Q T++  + 
Subjt:  ---KKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEEVDDSKEKESVDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRP

Query:  SVF
        S F
Subjt:  SVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAAAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAATAAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGCCAAGGAGGTCAAAGCCTATCGTGGAGGAAAGTGAAGATTTCTTTTGCCTTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAAAGGCACTTGAAACTGTCACGTGTCACATTGTGGACATGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAACGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCC
CTTATCTCAACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAATGAAGGCTATAGTCTGCCTACAACGAGAAAAGGACTGG
GATATAAGTCGCCTGAGCCAGTTTGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGT
GTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCCGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAGCGGAAGAAGAAAGCACACAACCTAC
CAATAGCTCCACTCGACCTTCAGTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGAAAACGAAGGTTGGACCCTTGTCGTTCGTCGCAAAAATAAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGACAATAAAAGAAAGGCTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGCCAAGGAGGTCAAAGCCTATCGTGGAGGAAAGTGAAGATTTCTTTTGCCTTC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAAAGGCACTTGAAACTGTCACGTGTCACATTGTGGACATGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAACGGGTGAAGCGTCTACAAGCCTTGCGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGATACGTCCC
CTTATCTCAACGTAAAAAGGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAACTTCTAAATGAAGGCTATAGTCTGCCTACAACGAGAAAAGGACTGG
GATATAAGTCGCCTGAGCCAGTTTGCATAATAAGAAGAGGGAAGGCGAAAGTGGCAGATACAAATCATATAACAGTAGAAGAGGTTGATGACTCAAAAGAAAAAGAAAGT
GTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCCGTTGCTCGTGCTTTAGTCTTTCAGAGATTAAGTGTCAATGAAGCGGAAGAAGAAAGCACACAACCTAC
CAATAGCTCCACTCGACCTTCAGTTTTTTGA
Protein sequenceShow/hide protein sequence
MKGSQEKYVSIEDENEGWTLVVRRKNKKQSYARKESRLFRDNKRKAKSQKKKGKKKPRRSKPIVEESEDFFCLPQPITLAEYFPRRFLDDSQGKALETVTCHIVDMVEDD
DVPASSSGTGEASTSLAKPKVVKDEKCSNSPILRYVPLSQRKKGESPFTECSESIKKKLLNEGYSLPTTRKGLGYKSPEPVCIIRRGKAKVADTNHITVEEVDDSKEKES
VDQRTSVFRRIRPPVARALVFQRLSVNEAEEESTQPTNSSTRPSVF