CuGenDBv2

Gene ID	Spg034644
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING-type E3 ubiquitin transferase
Genome location	scaffold7:44780792..44786411
RNA-Seq Expression	Spg034644
Synteny	Spg034644
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6594642.1 U-box domain-containing protein 8, partial [Cucurbita argyrosperma subsp. sororia]

4.4e-25

61.54

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Query:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR
        +GAIGLTVAALQ RSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL                             V  VECGAVPILL+IAN GLDR
Subjt:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR

Query:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI
        AVEVLGLLAK  E   R E + F  S+ ++
Subjt:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI

XP_022926697.1 U-box domain-containing protein 8-like [Cucurbita moschata]

4.4e-25

61.54

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Query:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR
        +GAIGLTVAALQ RSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL                             V  VECGAVPILL+IAN GLDR
Subjt:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR

Query:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI
        AVEVLGLLAK  E   R E + F  S+ ++
Subjt:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI

XP_023002950.1 U-box domain-containing protein 8-like [Cucurbita maxima]

5.8e-25

60.77

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Query:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR
        +GAIGLTVAALQ RSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL                             V  VECGAVP+LL+IAN GLDR
Subjt:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR

Query:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI
        AVEVLGLLAK  E   R E + F  S+ ++
Subjt:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI

XP_023517783.1 U-box domain-containing protein 8-like [Cucurbita pepo subsp. pepo]

4.4e-25

61.54

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Query:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR
        +GAIGLTVAALQ RSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL                             V  VECGAVPILL+IAN GLDR
Subjt:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR

Query:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI
        AVEVLGLLAK  E   R E + F  S+ ++
Subjt:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI

XP_038883486.1 U-box domain-containing protein 8 [Benincasa hispida]

1.2e-25

60.15

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Query:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR
        +GAIGLTVAALQ RS DCRAVAATMLTSLAVVEVNKATIGAYPYA+RSL                             V AVECGAVPILLKIAN GLDR
Subjt:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR

Query:  AVEVLGLLAKSSECAWRPEEKAFWESVAVINCI
        AVEVLG+LAK  E   R E + F   V ++ C+
Subjt:  AVEVLGLLAKSSECAWRPEEKAFWESVAVINCI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHY9 RING-type E3 ubiquitin transferase

6.9e-24

65.49

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Query:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRS-------------------LGTVCA--------VECGAVPILLKIANFGLDR
        +GAIGLTVAALQ RS DCRAVAATMLTSLAVVEVNKATIGAYPYA+RS                   L  +C+        VECGAVPILLKIAN GLDR
Subjt:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRS-------------------LGTVCA--------VECGAVPILLKIANFGLDR

Query:  AVEVLGLLAKSSE
        AVEVLG+LAK  E
Subjt:  AVEVLGLLAKSSE

A0A6J1EF39 RING-type E3 ubiquitin transferase

2.1e-25

61.54

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Query:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR
        +GAIGLTVAALQ RSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL                             V  VECGAVPILL+IAN GLDR
Subjt:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR

Query:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI
        AVEVLGLLAK  E   R E + F  S+ ++
Subjt:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI

A0A6J1GE93 RING-type E3 ubiquitin transferase

3.6e-25

59.4

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Query:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRS-------------------LGTVC--------AVECGAVPILLKIANFGLDR
        +GAIG TVAALQ RSPDCRAVAATMLTSLAVVEVNKATIGAYP+A+RS                   L  +C        AVECG VPILLKIAN GLDR
Subjt:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRS-------------------LGTVC--------AVECGAVPILLKIANFGLDR

Query:  AVEVLGLLAKSSECAWRPEEKAFWESVAVINCI
        AVEVLGLLAK  E   R E + F   V ++ C+
Subjt:  AVEVLGLLAKSSECAWRPEEKAFWESVAVINCI

A0A6J1IPS0 RING-type E3 ubiquitin transferase

3.6e-25

59.4

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Query:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRS-------------------LGTVC--------AVECGAVPILLKIANFGLDR
        +GAIG TVAALQ RSPDCRAVAATMLTSLAVVEVNKATIGAYP+A+RS                   L  +C        AVECG VPILLKIAN GLDR
Subjt:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRS-------------------LGTVC--------AVECGAVPILLKIANFGLDR

Query:  AVEVLGLLAKSSECAWRPEEKAFWESVAVINCI
        AVEVLGLLAK  E   R E + F   V ++ C+
Subjt:  AVEVLGLLAKSSECAWRPEEKAFWESVAVINCI

A0A6J1KQE6 RING-type E3 ubiquitin transferase

2.8e-25

60.77

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Query:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR
        +GAIGLTVAALQ RSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL                             V  VECGAVP+LL+IAN GLDR
Subjt:  QGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSL---------------------------GTVCAVECGAVPILLKIANFGLDR

Query:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI
        AVEVLGLLAK  E   R E + F  S+ ++
Subjt:  AVEVLGLLAKSSECAWRPEEKAFWESVAVI

SwissProt top hits

e value

%identity

Alignment

O81902 U-box domain-containing protein 8

1.9e-15

48.62

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Query:  GAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLGTVC---------------------------AVECGAVPILLKIANFGLDRA
        G I   V  L+V SPDC+A+AAT+LTSLAVVEVNKATIG+YP AI +L ++                             V+CG+VPIL++ A+ GL+RA
Subjt:  GAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLGTVC---------------------------AVECGAVPILLKIANFGLDRA

Query:  VEVLGLLAK
        VEVLGLL K
Subjt:  VEVLGLLAK

Arabidopsis top hits

e value

%identity

Alignment

AT4G21350.1 plant U-box 8

1.4e-16

48.62

Show/hide

Query:  GAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLGTVC---------------------------AVECGAVPILLKIANFGLDRA
        G I   V  L+V SPDC+A+AAT+LTSLAVVEVNKATIG+YP AI +L ++                             V+CG+VPIL++ A+ GL+RA
Subjt:  GAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLGTVC---------------------------AVECGAVPILLKIANFGLDRA

Query:  VEVLGLLAK
        VEVLGLL K
Subjt:  VEVLGLLAK

Sequences

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CDS sequence

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ATGAAGCCCCCTGTGTTTTTCTTTAGCCGCAGACCCCCCGATTTCCAGCCTTTAGCCGCCCAGCCCTGCCGCCGATGCGTCGCCGCCGTCGCCAGTCCGTCGCCCCGTCC
CGTCTTCTCGCACGCTCTCTCTCTCCGTCGTTCTCCAGTTCAAGGGGCTATCGGTCTCACCGTGGCTGCTCTTCAAGTCAGGTCCCCCGATTGCAGAGCCGTAGCCGCCA
CGATGCTGACGAGCTTAGCCGTTGTGGAGGTTAACAAGGCTACGATTGGGGCTTATCCCTACGCGATTCGTTCTCTTGGAACCGTCTGCGCTGTGGAATGTGGGGCTGTT
CCAATTTTGCTTAAAATTGCGAATTTTGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTTTGGCCAAGTCGAGCGAATGTGCGTGGAGGCCAGAAGAGAAAGCATTTTG
GGAATCTGTAGCTGTAATTAATTGCATTGAAACCCCACATTCCTTGTTTCTCGATTCTGTTAGAAATGAGATGGGATCTAAGCCATACCAACTGTACGGACTTGTCCTGT
TGGTTGTTGTTTTGTTTTCCTTTGCATTTGGAAATGAATTCAACTGGGATTCGGATTCTCGAGAAGACTTTTGGTTTGGAAATCATGGTCTATTGCTTTACACATACCGG
CCAAATGGGAGCTTTTACCATGTGTTTCATGAGATGAATCCTACTCTAGCTCTTACATTGGTTCTCTTGACGCTTTTAAAAGCGTCAAGAGTATTAACAGTTGACATTCC
AAAAGCGTCAAGTCCTCACCGGAGCTTTGGAAGCGATTCGGGGCTTAAACGAGCGAAATTGGAGTGTAAAATGACCAAACTGCCCCTGGAGCCGTCACAGCCTCGAGACG
CTACCGTCAGAGCGTCGGGACGCTGCGCAAATTAG

mRNA sequence

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Protein sequence

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MKPPVFFFSRRPPDFQPLAAQPCRRCVAAVASPSPRPVFSHALSLRRSPVQGAIGLTVAALQVRSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLGTVCAVECGAV
PILLKIANFGLDRAVEVLGLLAKSSECAWRPEEKAFWESVAVINCIETPHSLFLDSVRNEMGSKPYQLYGLVLLVVVLFSFAFGNEFNWDSDSREDFWFGNHGLLLYTYR
PNGSFYHVFHEMNPTLALTLVLLTLLKASRVLTVDIPKASSPHRSFGSDSGLKRAKLECKMTKLPLEPSQPRDATVRASGRCAN

Spg034644 (gene) of Sponge gourd (cylindrica) v1 genome