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Spg034693 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034693
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold7:46246221..46248926
RNA-Seq ExpressionSpg034693
SyntenySpg034693
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.6e-1543.97Show/hide
Query:  RICVQPGNLWFF----SRFELHRRNQEVSCRVFENEDFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFS---------------
        RI  +PG    F    S  E+H+ NQ++   +F         ++  SVLR     +  VEIELPVPDTLPTSAES  S+SSTW                 
Subjt:  RICVQPGNLWFF----SRFELHRRNQEVSCRVFENEDFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFS---------------

Query:  ----------VSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG
                  +++GS GIVRGDDV WLHAVFRAK AGGPGG
Subjt:  ----------VSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]5.2e-1947.68Show/hide
Query:  QPGNLWFFSR----FELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------V
        +PG    FS       +H  NQ    VSCRVF +EDF VYFINFG VLRKLWVLEVR                                          V
Subjt:  QPGNLWFFSR----FELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------V

Query:  EIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKL
        EIELPVPDT PTSAESS S+SS        S+GIVRGDDV WLHAVFRAK+
Subjt:  EIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKL

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]6.0e-2335.21Show/hide
Query:  GNDSSKTHH-RLNSFSAHFHLISHPFPLKLSEHFKERVKEEGEDEFRGLRLKKIGKSSCKASHCRI-----CVQPGNLWFFSR----FELHRRNQE----
        G    K HH +L  F  +F    H FP KLSEHF+ERVKEE E+EFRGLRLKKIGKSSCKA+HCRI       +P     FS      E+ + NQ+    
Subjt:  GNDSSKTHH-RLNSFSAHFHLISHPFPLKLSEHFKERVKEEGEDEFRGLRLKKIGKSSCKASHCRI-----CVQPGNLWFFSR----FELHRRNQE----

Query:  --------------------------------------VSCRV-------------------------------FENED-------FDVYFINFGSVLRK
                                              +S R+                               ++ +D       + V  +N G   R 
Subjt:  --------------------------------------VSCRV-------------------------------FENED-------FDVYFINFGSVLRK

Query:  LWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFSV-------------------SIGSSGIVRGDDVYWLHAVFRAKLAGGPGG
        L  ++  +EIEL VPDTLPTSAESS S+SSTW                       + S+GIVR +DV WLHAVFRAK+AGG GG
Subjt:  LWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFSV-------------------SIGSSGIVRGDDVYWLHAVFRAKLAGGPGG

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]6.8e-1946.9Show/hide
Query:  SRFELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPT
        S  E+H+  Q+   VSCRV ENEDF VYFIN G VLRKLWVLEVR                                          VEIELPVPDTLPT
Subjt:  SRFELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPT

Query:  SAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG
                 +  +    GS+GIVRGDDV WLHAV RAK+AGGPGG
Subjt:  SAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]1.8e-1945.06Show/hide
Query:  SRFELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR-------------------------------------------------------
        S  E+H+ NQ+   VSCRVFENE F VYFINFG VLRKLWVLE R                                                       
Subjt:  SRFELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR-------------------------------------------------------

Query:  ----VEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG
            VEIELPVPDTLPTSAES  S+          S+GIVRGDDV WLHAVFRAK AG PGG
Subjt:  ----VEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5D3BQ75 Uncharacterized protein2.5e-1947.68Show/hide
Query:  QPGNLWFFSR----FELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------V
        +PG    FS       +H  NQ    VSCRVF +EDF VYFINFG VLRKLWVLEVR                                          V
Subjt:  QPGNLWFFSR----FELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------V

Query:  EIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKL
        EIELPVPDT PTSAESS S+SS        S+GIVRGDDV WLHAVFRAK+
Subjt:  EIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKL

A0A5D3CAC6 Uncharacterized protein2.9e-2335.21Show/hide
Query:  GNDSSKTHH-RLNSFSAHFHLISHPFPLKLSEHFKERVKEEGEDEFRGLRLKKIGKSSCKASHCRI-----CVQPGNLWFFSR----FELHRRNQE----
        G    K HH +L  F  +F    H FP KLSEHF+ERVKEE E+EFRGLRLKKIGKSSCKA+HCRI       +P     FS      E+ + NQ+    
Subjt:  GNDSSKTHH-RLNSFSAHFHLISHPFPLKLSEHFKERVKEEGEDEFRGLRLKKIGKSSCKASHCRI-----CVQPGNLWFFSR----FELHRRNQE----

Query:  --------------------------------------VSCRV-------------------------------FENED-------FDVYFINFGSVLRK
                                              +S R+                               ++ +D       + V  +N G   R 
Subjt:  --------------------------------------VSCRV-------------------------------FENED-------FDVYFINFGSVLRK

Query:  LWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFSV-------------------SIGSSGIVRGDDVYWLHAVFRAKLAGGPGG
        L  ++  +EIEL VPDTLPTSAESS S+SSTW                       + S+GIVR +DV WLHAVFRAK+AGG GG
Subjt:  LWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFSV-------------------SIGSSGIVRGDDVYWLHAVFRAKLAGGPGG

A0A5D3CJL4 Retrotrans_gag domain-containing protein3.3e-1946.9Show/hide
Query:  SRFELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPT
        S  E+H+  Q+   VSCRV ENEDF VYFIN G VLRKLWVLEVR                                          VEIELPVPDTLPT
Subjt:  SRFELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVPDTLPT

Query:  SAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG
                 +  +    GS+GIVRGDDV WLHAV RAK+AGGPGG
Subjt:  SAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein1.4e-1443.38Show/hide
Query:  SRFELHRRNQE---------VSCRVFENEDFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTW------------------------
        S  E+H+ NQ+         +S +  E +   ++ ++  SVLR     +    IELPVPDTLPTSAESS S+SSTW                        
Subjt:  SRFELHRRNQE---------VSCRVFENEDFDVYFINFGSVLRKLWVLEVRVEIELPVPDTLPTSAESSRSSSSTW------------------------

Query:  ---FSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG
           F+VS+GS+GIVRGDDV WLHAVFRAK  GGPGG
Subjt:  ---FSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG

A0A5D3CSJ5 Putative polyprotein8.7e-2045.06Show/hide
Query:  SRFELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR-------------------------------------------------------
        S  E+H+ NQ+   VSCRVFENE F VYFINFG VLRKLWVLE R                                                       
Subjt:  SRFELHRRNQE---VSCRVFENEDFDVYFINFGSVLRKLWVLEVR-------------------------------------------------------

Query:  ----VEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG
            VEIELPVPDTLPTSAES  S+          S+GIVRGDDV WLHAVFRAK AG PGG
Subjt:  ----VEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATGACAGCTCAAAAACCCACCACCGACTAAACTCTTTTTCAGCCCATTTCCATCTCATTTCTCATCCTTTTCCATTGAAACTTTCAGAGCACTTTAAGGAGAG
AGTGAAGGAAGAAGGAGAAGATGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCTGCGTTCAACCTGGCAACCTCT
GGTTTTTTAGTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGATTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGG
AAGTTGTGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTC
AATAGGGTCATCAGGGATCGTTAGAGGTGACGATGTCTATTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAGAAAGCAATTTTGCGGGTAT
ACCCACAGATCTATGTTCTTGAACAGTCTCGGAGAAGGCCACCAGCACCCGACTTACCAGAATGTCCCGTGGCAGCACAATGCAAGTCTTGGTTCCTCTTGGAAGCACCA
TCAGTATTGAATTTTAACCGGAAGGAAATTCCCAAGCAATCAACTTGCTTACCTTCATACTTGGCTCAGTTTTCTTCGAATAGAAAGCAGAGACAGCAATTTAAACATCG
TTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATGACAGCTCAAAAACCCACCACCGACTAAACTCTTTTTCAGCCCATTTCCATCTCATTTCTCATCCTTTTCCATTGAAACTTTCAGAGCACTTTAAGGAGAG
AGTGAAGGAAGAAGGAGAAGATGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCTGCGTTCAACCTGGCAACCTCT
GGTTTTTTAGTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGATTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGG
AAGTTGTGGGTGTTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTC
AATAGGGTCATCAGGGATCGTTAGAGGTGACGATGTCTATTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAGAAAGCAATTTTGCGGGTAT
ACCCACAGATCTATGTTCTTGAACAGTCTCGGAGAAGGCCACCAGCACCCGACTTACCAGAATGTCCCGTGGCAGCACAATGCAAGTCTTGGTTCCTCTTGGAAGCACCA
TCAGTATTGAATTTTAACCGGAAGGAAATTCCCAAGCAATCAACTTGCTTACCTTCATACTTGGCTCAGTTTTCTTCGAATAGAAAGCAGAGACAGCAATTTAAACATCG
TTAG
Protein sequenceShow/hide protein sequence
MGNDSSKTHHRLNSFSAHFHLISHPFPLKLSEHFKERVKEEGEDEFRGLRLKKIGKSSCKASHCRICVQPGNLWFFSRFELHRRNQEVSCRVFENEDFDVYFINFGSVLR
KLWVLEVRVEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGEKAILRVYPQIYVLEQSRRRPPAPDLPECPVAAQCKSWFLLEAP
SVLNFNRKEIPKQSTCLPSYLAQFSSNRKQRQQFKHR