; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034697 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034697
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationscaffold7:44760992..44768597
RNA-Seq ExpressionSpg034697
SyntenySpg034697
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8516701.1 hypothetical protein F0562_016793 [Nyssa sinensis]5.4e-1136.57Show/hide
Query:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--
        ST       +   +P+ LL+NICNL++ RLDSSNYV W+FQIS +L++H L  Y+DGT   P + ++ E      Q+NPE++ W  N     L  L+   
Subjt:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--

Query:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN
        + +T L   +    +  A  LA+E  F +  R N
Subjt:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN

KAA8518236.1 hypothetical protein F0562_015710 [Nyssa sinensis]2.4e-1139.67Show/hide
Query:  TPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVEG--QPDQMNPEFEKWAQNPSFDELHVLMK--IEETVLDKKMKLE
        +P+ LL+NICNL++ RLDSSNYV W+FQIS +LR+H L  Y+DGT   P + ++ EG     Q+NP+++ W  N     L  L+   + +T L   +   
Subjt:  TPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVEG--QPDQMNPEFEKWAQNPSFDELHVLMK--IEETVLDKKMKLE

Query:  DANSAPRLAMEANFDSQGRGN
         +  A  LA+E  F +  R N
Subjt:  DANSAPRLAMEANFDSQGRGN

KAA8519786.1 hypothetical protein F0562_014124 [Nyssa sinensis]5.4e-1136.57Show/hide
Query:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--
        ST       +   +P+ LL+NICNL++ RLDSSNYV W+FQIS +L++H L  Y+DGT   P + ++ E      Q+NPE++ W  N     L  L+   
Subjt:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--

Query:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN
        + +T L   +    +  A  LA+E  F +  R N
Subjt:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN

KAA8524269.1 hypothetical protein F0562_010692 [Nyssa sinensis]5.4e-1136.57Show/hide
Query:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--
        ST       +   +P+ LL+NICNL++ RLDSSNYV W+FQIS +L++H L  Y+DGT   P + ++ E      Q+NPE++ W  N     L  L+   
Subjt:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--

Query:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN
        + +T L   +    +  A  LA+E  F +  R N
Subjt:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN

KAA8537769.1 hypothetical protein F0562_027652 [Nyssa sinensis]5.4e-1136.57Show/hide
Query:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--
        ST       +   +P+ LL+NICNL++ RLDSSNYV W+FQIS +L++H L  Y+DGT   P + ++ E      Q+NPE++ W  N     L  L+   
Subjt:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--

Query:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN
        + +T L   +    +  A  LA+E  F +  R N
Subjt:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN

TrEMBL top hitse value%identityAlignment
A0A5J4ZHB6 Uncharacterized protein2.6e-1136.57Show/hide
Query:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--
        ST       +   +P+ LL+NICNL++ RLDSSNYV W+FQIS +L++H L  Y+DGT   P + ++ E      Q+NPE++ W  N     L  L+   
Subjt:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--

Query:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN
        + +T L   +    +  A  LA+E  F +  R N
Subjt:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN

A0A5J4ZKU4 Retrotran_gag_3 domain-containing protein1.2e-1139.67Show/hide
Query:  TPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVEG--QPDQMNPEFEKWAQNPSFDELHVLMK--IEETVLDKKMKLE
        +P+ LL+NICNL++ RLDSSNYV W+FQIS +LR+H L  Y+DGT   P + ++ EG     Q+NP+++ W  N     L  L+   + +T L   +   
Subjt:  TPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVEG--QPDQMNPEFEKWAQNPSFDELHVLMK--IEETVLDKKMKLE

Query:  DANSAPRLAMEANFDSQGRGN
         +  A  LA+E  F +  R N
Subjt:  DANSAPRLAMEANFDSQGRGN

A0A5J5A0G3 Retrotran_gag_3 domain-containing protein2.6e-1136.57Show/hide
Query:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--
        ST       +   +P+ LL+NICNL++ RLDSSNYV W+FQIS +L++H L  Y+DGT   P + ++ E      Q+NPE++ W  N     L  L+   
Subjt:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--

Query:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN
        + +T L   +    +  A  LA+E  F +  R N
Subjt:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN

A0A5J5B049 Retrotran_gag_3 domain-containing protein2.6e-1136.57Show/hide
Query:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--
        ST       +   +P+ LL+NICNL++ RLDSSNYV W+FQIS +L++H L  Y+DGT   P + ++ E      Q+NPE++ W  N     L  L+   
Subjt:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--

Query:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN
        + +T L   +    +  A  LA+E  F +  R N
Subjt:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN

A0A5J5B4Y2 Retrotran_gag_3 domain-containing protein2.6e-1136.57Show/hide
Query:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--
        ST       +   +P+ LL+NICNL++ RLDSSNYV W+FQIS +L++H L  Y+DGT   P + ++ E      Q+NPE++ W  N     L  L+   
Subjt:  STDQALIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVE--GQPDQMNPEFEKWAQNPSFDELHVLMK--

Query:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN
        + +T L   +    +  A  LA+E  F +  R N
Subjt:  IEETVLDKKMKLEDANSAPRLAMEANFDSQGRGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGCTCGCAGTAAAGGACTGTTGAGAAGGACTGTTGCGGTGTGTGGTCCCGGTAGTAAATCTCGAGATGAATCTTATCTTGTCTATTTTGGCATAGATTTACTACA
ATTTGATATGATCAAATGTAAGTCGAGTCATGTAAATCTGTGTCCAGAATTAGGATTGAATTTGGTGAAGAACTATACCAATTTGGGTGAAATCGGAGAAGAATTGCAAC
TGGAAATTGAAGAACAGAGTGTTGGTCGAGGCGTAGCGTTGAGATGTAAGTGGAAAAAGGATGCGTGTCAACGTATCATACGGTCTCTTCCACAGTCTACTGATCAAGCC
CTAATTGTTGGCTCTTCAGTCAGTACACCAGTCTCCCTTCTCAACAATATCTGCAATTTGGTATCCGTACGGCTTGACTCTTCCAACTATGTTCTATGGCGATTTCAGAT
TTCTCCTCTTCTTCGGTCGCATAAACTGTTCAAGTATCTTGATGGCACCATTACGGTGCCTGCAGAAAAGATCCGTGTCGAAGGTCAGCCTGATCAGATGAATCCCGAGT
TTGAAAAGTGGGCTCAGAATCCGTCGTTTGATGAGCTTCATGTTCTTATGAAAATTGAGGAAACAGTTCTTGACAAGAAGATGAAATTGGAAGATGCAAACTCTGCACCA
CGATTAGCGATGGAAGCCAATTTCGATTCACAAGGAAGGGGCAATTGGTGCGGCCAAGGCAGAGGAGGTCGTGGAGGAAGATTCGACTCTGGTCGCAATAGAGGGCGCGG
TCGTGGGAGGAGTAGTCGATCACCCTTTGGTGGATGTTGCTCTAAACCTCTAAACATGTCTACTTCTATAATTGCCTTGCTGGCAAATGAAAAACTAACTGGAGATAATT
ATACGTTGAAGTCCAACCTGAATATAATTCTTGTAATGGACGATCTGCGGTTTGTCTTAACTGAGGAATGTCCTCAGCCCCTTCTCGCAGTGCATATCAGGCTACCCGAG
ATGCATTCGACCATCGGACTAAGGCCAATGATGATAGCGAGCATAGCTAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGCTCGCAGTAAAGGACTGTTGAGAAGGACTGTTGCGGTGTGTGGTCCCGGTAGTAAATCTCGAGATGAATCTTATCTTGTCTATTTTGGCATAGATTTACTACA
ATTTGATATGATCAAATGTAAGTCGAGTCATGTAAATCTGTGTCCAGAATTAGGATTGAATTTGGTGAAGAACTATACCAATTTGGGTGAAATCGGAGAAGAATTGCAAC
TGGAAATTGAAGAACAGAGTGTTGGTCGAGGCGTAGCGTTGAGATGTAAGTGGAAAAAGGATGCGTGTCAACGTATCATACGGTCTCTTCCACAGTCTACTGATCAAGCC
CTAATTGTTGGCTCTTCAGTCAGTACACCAGTCTCCCTTCTCAACAATATCTGCAATTTGGTATCCGTACGGCTTGACTCTTCCAACTATGTTCTATGGCGATTTCAGAT
TTCTCCTCTTCTTCGGTCGCATAAACTGTTCAAGTATCTTGATGGCACCATTACGGTGCCTGCAGAAAAGATCCGTGTCGAAGGTCAGCCTGATCAGATGAATCCCGAGT
TTGAAAAGTGGGCTCAGAATCCGTCGTTTGATGAGCTTCATGTTCTTATGAAAATTGAGGAAACAGTTCTTGACAAGAAGATGAAATTGGAAGATGCAAACTCTGCACCA
CGATTAGCGATGGAAGCCAATTTCGATTCACAAGGAAGGGGCAATTGGTGCGGCCAAGGCAGAGGAGGTCGTGGAGGAAGATTCGACTCTGGTCGCAATAGAGGGCGCGG
TCGTGGGAGGAGTAGTCGATCACCCTTTGGTGGATGTTGCTCTAAACCTCTAAACATGTCTACTTCTATAATTGCCTTGCTGGCAAATGAAAAACTAACTGGAGATAATT
ATACGTTGAAGTCCAACCTGAATATAATTCTTGTAATGGACGATCTGCGGTTTGTCTTAACTGAGGAATGTCCTCAGCCCCTTCTCGCAGTGCATATCAGGCTACCCGAG
ATGCATTCGACCATCGGACTAAGGCCAATGATGATAGCGAGCATAGCTAGCTAG
Protein sequenceShow/hide protein sequence
MTARSKGLLRRTVAVCGPGSKSRDESYLVYFGIDLLQFDMIKCKSSHVNLCPELGLNLVKNYTNLGEIGEELQLEIEEQSVGRGVALRCKWKKDACQRIIRSLPQSTDQA
LIVGSSVSTPVSLLNNICNLVSVRLDSSNYVLWRFQISPLLRSHKLFKYLDGTITVPAEKIRVEGQPDQMNPEFEKWAQNPSFDELHVLMKIEETVLDKKMKLEDANSAP
RLAMEANFDSQGRGNWCGQGRGGRGGRFDSGRNRGRGRGRSSRSPFGGCCSKPLNMSTSIIALLANEKLTGDNYTLKSNLNIILVMDDLRFVLTEECPQPLLAVHIRLPE
MHSTIGLRPMMIASIAS