; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034730 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034730
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold7:45489876..45492960
RNA-Seq ExpressionSpg034730
SyntenySpg034730
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025355.1 uncharacterized protein E6C27_scaffold1204G00390 [Cucumis melo var. makuwa]1.4e-4349.3Show/hide
Query:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF
        +TK+   + EKI   +++ +N  VLRY+PLSRRKKG+SPFAECS NL V + EILKE+F  PLTKI K E ++IE   ++A L  +RT +GFDPKAYKL 
Subjt:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF

Query:  AKADYDFTTHTEFKR-----------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVTRSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLS
        AKA YDFTT TE K            K KV+++ +ITVEE  D +EGK+ +  R+S FDRI  S  R S+FQR+ST+  +  +Q S   STR S FQ L+
Subjt:  AKADYDFTTHTEFKR-----------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVTRSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLS

Query:  MAFEEKGNVHSTPTT
           ++  ++  TPTT
Subjt:  MAFEEKGNVHSTPTT

KAA0031753.1 gag protease polyprotein [Cucumis melo var. makuwa]6.2e-4449.77Show/hide
Query:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF
        +TK+   + EKI   +++ +N PVLRY+ LSRRKKG+SPF ECS NL V + EILKE+F  PLTKI K E  +IE   ++A L  +RT +GFDPKAYKL 
Subjt:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF

Query:  AKADYDFTTHTEFKR-----------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVTRSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLS
        AKA YDFTT TE K            KAKV+++ +ITVEE  D EEGK+ +  R+S FDRI  S  R S+FQR+ST+  +  +Q S   STR S FQ L+
Subjt:  AKADYDFTTHTEFKR-----------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVTRSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLS

Query:  MAFEEKGNVHSTPTT
         + ++  ++  TPTT
Subjt:  MAFEEKGNVHSTPTT

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]3.8e-4143.37Show/hide
Query:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF
        +TK+   + EKI   +++ +N PVLRY+PLSRRKKG+SPF ECS NL V + EILKE+F  PLTKI K E ++IE   ++A L  +RT +GFDPKAYKL 
Subjt:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF

Query:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT
        AKA YDFTT TE K                                              KAKV+++ +ITVEE  D EEGK+ +  R+S FDRI  S  
Subjt:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT

Query:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT
        R S+FQR+ST+  +  +Q S   STR S FQ L+ + ++  ++  TPTT
Subjt:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]3.8e-4143.37Show/hide
Query:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF
        +TK+   + EKI   +++ +N PVLRY+PLSRRKKG+SPF ECS NL V + EILKE+F  PLTKI K E ++IE   ++A L  +RT +GFDPKAYKL 
Subjt:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF

Query:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT
        AKA YDFTT TE K                                              KAKV+++ +ITVEE  D EEGK+ +  R+S FDRI  S  
Subjt:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT

Query:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT
        R S+FQR+ST+  +  +Q S   STR S FQ L+ + ++  ++  TPTT
Subjt:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]3.8e-4143.37Show/hide
Query:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF
        +TK+   + EKI   +++ +N PVLRY+PLSRRKKG+SPF ECS NL V + EILKE+F  PLTKI K E ++IE   ++A L  +RT +GFDPKAYKL 
Subjt:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF

Query:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT
        AKA YDFTT TE K                                              KAKV+++ +ITVEE  D EEGK+ +  R+S FDRI  S  
Subjt:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT

Query:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT
        R S+FQR+ST+  +  +Q S   STR S FQ L+ + ++  ++  TPTT
Subjt:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT

TrEMBL top hitse value%identityAlignment
A0A5A7SLL7 Ribonuclease H6.7e-4449.3Show/hide
Query:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF
        +TK+   + EKI   +++ +N  VLRY+PLSRRKKG+SPFAECS NL V + EILKE+F  PLTKI K E ++IE   ++A L  +RT +GFDPKAYKL 
Subjt:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF

Query:  AKADYDFTTHTEFKR-----------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVTRSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLS
        AKA YDFTT TE K            K KV+++ +ITVEE  D +EGK+ +  R+S FDRI  S  R S+FQR+ST+  +  +Q S   STR S FQ L+
Subjt:  AKADYDFTTHTEFKR-----------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVTRSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLS

Query:  MAFEEKGNVHSTPTT
           ++  ++  TPTT
Subjt:  MAFEEKGNVHSTPTT

A0A5A7SND9 Gag protease polyprotein3.0e-4449.77Show/hide
Query:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF
        +TK+   + EKI   +++ +N PVLRY+ LSRRKKG+SPF ECS NL V + EILKE+F  PLTKI K E  +IE   ++A L  +RT +GFDPKAYKL 
Subjt:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF

Query:  AKADYDFTTHTEFKR-----------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVTRSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLS
        AKA YDFTT TE K            KAKV+++ +ITVEE  D EEGK+ +  R+S FDRI  S  R S+FQR+ST+  +  +Q S   STR S FQ L+
Subjt:  AKADYDFTTHTEFKR-----------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVTRSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLS

Query:  MAFEEKGNVHSTPTT
         + ++  ++  TPTT
Subjt:  MAFEEKGNVHSTPTT

A0A5A7TZU9 Ribonuclease H1.8e-4143.37Show/hide
Query:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF
        +TK+   + EKI   +++ +N PVLRY+PLSRRKKG+SPF ECS NL V + EILKE+F  PLTKI K E ++IE   ++A L  +RT +GFDPKAYKL 
Subjt:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF

Query:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT
        AKA YDFTT TE K                                              KAKV+++ +ITVEE  D EEGK+ +  R+S FDRI  S  
Subjt:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT

Query:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT
        R S+FQR+ST+  +  +Q S   STR S FQ L+ + ++  ++  TPTT
Subjt:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT

A0A5D3BIH8 Uncharacterized protein1.8e-4143.37Show/hide
Query:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF
        +TK+   + EKI   +++ +N PVLRY+PLSRRKKG+SPF ECS NL V + EILKE+F  PLTKI K E ++IE   ++A L  +RT +GFDPKAYKL 
Subjt:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF

Query:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT
        AKA YDFTT TE K                                              KAKV+++ +ITVEE  D EEGK+ +  R+S FDRI  S  
Subjt:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT

Query:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT
        R S+FQR+ST+  +  +Q S   STR S FQ L+ + ++  ++  TPTT
Subjt:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT

A0A5D3D1E5 Ribonuclease H1.8e-4143.37Show/hide
Query:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF
        +TK+   + EKI   +++ +N PVLRY+PLSRRKKG+SPF ECS NL V + EILKE+F  PLTKI K E ++IE   ++A L  +RT +GFDPKAYKL 
Subjt:  KTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVEILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLF

Query:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT
        AKA YDFTT TE K                                              KAKV+++ +ITVEE  D EEGK+ +  R+S FDRI  S  
Subjt:  AKADYDFTTHTEFKR---------------------------------------------KAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVT

Query:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT
        R S+FQR+ST+  +  +Q S   STR S FQ L+ + ++  ++  TPTT
Subjt:  RSSIFQRLSTTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACCACCCTTCGGATCACCCACTACGCTCTAAGATTACTGAGAATGGCTTGTGGGAACCAATCTACACGTCTTGATACCCCCACTCGCATGTCTCCTACATGGAT
GCTTTGGATCATTGCATCTGTATCGGATACAAGGTGGGTCGTATCACAGTGTCACCAAGATAAGACAAAAGTTGAAGTGGCGAAGAATGAGAAAATACTACGTTCAGAAG
AGAAGAAGACAAACGCTCCTGTCTTGCGTTATGTTCCTTTATCTCGACGCAAAAAGGGTGATTCGCCATTTGCGGAATGCTCCAATAATTTAAGAGTTGGCGACGTTGAA
ATTTTGAAAGAGAGTTTTATCACACCTCTTACAAAGATAGCAAAAGAAGAGGTTGAGAGGATTGAAGATGGACAAATAAAAGCAACCTTGTCTAATAAACGAACAAAAGA
TGGGTTTGACCCTAAAGCATACAAACTATTTGCAAAGGCCGACTATGATTTCACGACTCATACTGAGTTTAAAAGGAAAGCAAAAGTTTCAGATTCGCTTTACATTACGG
TGGAAGAAATTGATGATCCTGAAGAAGGTAAAGAAAGCAAAGATCATCGGACTTCCGCTTTCGATCGCATTGGACCGTCTGTTACACGTTCTTCGATTTTTCAAAGGCTG
AGTACAACTGCAGTAGAGGGTGAAAGTCAACATTCAGCTTCTGGCTCCACACGACCTTCAACCTTCCAAATGCTAAGTATGGCTTTTGAAGAAAAAGGAAATGTGCATTC
AACTCCTACTACATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACACCACCCTTCGGATCACCCACTACGCTCTAAGATTACTGAGAATGGCTTGTGGGAACCAATCTACACGTCTTGATACCCCCACTCGCATGTCTCCTACATGGAT
GCTTTGGATCATTGCATCTGTATCGGATACAAGGTGGGTCGTATCACAGTGTCACCAAGATAAGACAAAAGTTGAAGTGGCGAAGAATGAGAAAATACTACGTTCAGAAG
AGAAGAAGACAAACGCTCCTGTCTTGCGTTATGTTCCTTTATCTCGACGCAAAAAGGGTGATTCGCCATTTGCGGAATGCTCCAATAATTTAAGAGTTGGCGACGTTGAA
ATTTTGAAAGAGAGTTTTATCACACCTCTTACAAAGATAGCAAAAGAAGAGGTTGAGAGGATTGAAGATGGACAAATAAAAGCAACCTTGTCTAATAAACGAACAAAAGA
TGGGTTTGACCCTAAAGCATACAAACTATTTGCAAAGGCCGACTATGATTTCACGACTCATACTGAGTTTAAAAGGAAAGCAAAAGTTTCAGATTCGCTTTACATTACGG
TGGAAGAAATTGATGATCCTGAAGAAGGTAAAGAAAGCAAAGATCATCGGACTTCCGCTTTCGATCGCATTGGACCGTCTGTTACACGTTCTTCGATTTTTCAAAGGCTG
AGTACAACTGCAGTAGAGGGTGAAAGTCAACATTCAGCTTCTGGCTCCACACGACCTTCAACCTTCCAAATGCTAAGTATGGCTTTTGAAGAAAAAGGAAATGTGCATTC
AACTCCTACTACATGA
Protein sequenceShow/hide protein sequence
MNTTLRITHYALRLLRMACGNQSTRLDTPTRMSPTWMLWIIASVSDTRWVVSQCHQDKTKVEVAKNEKILRSEEKKTNAPVLRYVPLSRRKKGDSPFAECSNNLRVGDVE
ILKESFITPLTKIAKEEVERIEDGQIKATLSNKRTKDGFDPKAYKLFAKADYDFTTHTEFKRKAKVSDSLYITVEEIDDPEEGKESKDHRTSAFDRIGPSVTRSSIFQRL
STTAVEGESQHSASGSTRPSTFQMLSMAFEEKGNVHSTPTT