; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034745 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034745
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold7:46547090..46559752
RNA-Seq ExpressionSpg034745
SyntenySpg034745
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8661093.1 hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus]2.7e-1831.02Show/hide
Query:  KWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALF-DCLDDDFLSAVLLAVARLGAKWDGHGVAR-TLKSQ
        KW+   ++P S   +LV +FY   ++     + VRG  I F+S  IN+ + L+D+   + +A F +  D +    VL  +     +W+G   +R ++  +
Subjt:  KWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALF-DCLDDDFLSAVLLAVARLGAKWDGHGVAR-TLKSQ

Query:  LLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEV
         L     LW H++KN++MPT H+ T+SL R++L++ IM   PID+G I+V+ +     K   A   P L+T+LCR   +   + +E+
Subjt:  LLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEV

PIN01433.1 hypothetical protein CDL12_26059 [Handroanthus impetiginosus]1.3e-1728.63Show/hide
Query:  ISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFD-CLDDDFLSAVLLAVARLGAKWD-GHGVART
        + +RKW+    +P S    LV +FY    + +  + LVRG  + F S  IN +Y   +IP  E +A  + C +      +   +   GA+W    G   +
Subjt:  ISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFD-CLDDDFLSAVLLAVARLGAKWD-GHGVART

Query:  LKSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRKDFDE
         KS  LD    +W+ ++  R++PT H   ++  R +L+YCIM G   D+G I+ +++ Q+A   +   + P L+T LC  + +     EE+   R   D 
Subjt:  LKSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRKDFDE

Query:  QWWARVTNTCNRRLQGSMPQPIPTPQP
            R+ N  +    GS P  +P P P
Subjt:  QWWARVTNTCNRRLQGSMPQPIPTPQP

PON70375.1 hypothetical protein PanWU01x14_080440 [Parasponia andersonii]2.1e-1831.44Show/hide
Query:  MTEQISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWD--GHG
        + + I Q  W+  C +P      LV +FY      + D V +RG  +  S   IN ++ L D P  E +   + +    L  VL  VA +GA+W+    G
Subjt:  MTEQISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWD--GHG

Query:  VARTLKSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEE
            L+S  L+    +W H++K+R++PT H  T+S + V L+Y ++ G  I++G ++   +C  AA+  GA F P L+TS+CR +      +EE
Subjt:  VARTLKSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEE

XP_024995361.1 formin-like protein 3 [Cynara cardunculus var. scolymus]8.7e-1728.72Show/hide
Query:  QISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWDGHGVARTL
        +I    WE +C  P  Y  + V +F       +  E+ VR   +++S   IN++ EL    Y++ + L     D+ L  +L  VA  G  W   G AR L
Subjt:  QISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWDGHGVARTL

Query:  KSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRK
        K+Q L  E  +W +++++ I P  HD  L L+RV+++YCI++  P D+G ++   +     +  G    P L+  L + + ++ A  ++V +M K
Subjt:  KSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRK

XP_038876674.1 chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]5.1e-1737.24Show/hide
Query:  RSYAPA-LVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWDG--HGVARTLKSQLLDFEPTL
        +S  PA +V DFYR +     D V ++  T++FS+  IN +Y+++D PYA  N + D   +  +   L  + +LG KW     GV+ TL S+ L  E  L
Subjt:  RSYAPA-LVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWDG--HGVARTLKSQLLDFEPTL

Query:  WMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETL
        W++ VK R++ T HD T+S  RV+  YCI++  PID+G ++   L
Subjt:  WMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETL

TrEMBL top hitse value%identityAlignment
A0A2G9G807 Uncharacterized protein6.5e-1828.63Show/hide
Query:  ISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFD-CLDDDFLSAVLLAVARLGAKWD-GHGVART
        + +RKW+    +P S    LV +FY    + +  + LVRG  + F S  IN +Y   +IP  E +A  + C +      +   +   GA+W    G   +
Subjt:  ISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFD-CLDDDFLSAVLLAVARLGAKWD-GHGVART

Query:  LKSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRKDFDE
         KS  LD    +W+ ++  R++PT H   ++  R +L+YCIM G   D+G I+ +++ Q+A   +   + P L+T LC  + +     EE+   R   D 
Subjt:  LKSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRKDFDE

Query:  QWWARVTNTCNRRLQGSMPQPIPTPQP
            R+ N  +    GS P  +P P P
Subjt:  QWWARVTNTCNRRLQGSMPQPIPTPQP

A0A2P5BCG4 Uncharacterized protein (Fragment)1.6e-1628.33Show/hide
Query:  MTEQISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWD--GHG
        + + I+Q  W+  C +P      LV +FY      E + V VRG  +++S   IN V+ L D P  E +     +    L  VL  VA  GA+W+    G
Subjt:  MTEQISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWD--GHG

Query:  VARTLKSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRK
            ++S L      +W H++K+R++PT H  T+S  R++L++ ++ G  I++G ++   +   AA+  GA F P L+T LCR +      +EE      
Subjt:  VARTLKSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRK

Query:  DFDEQWWARVTNTCNRRLQGSMPQPIPTPQPSEPTAAAND
        + D    AR+        Q    +    P  S P  A+++
Subjt:  DFDEQWWARVTNTCNRRLQGSMPQPIPTPQPSEPTAAAND

A0A2P5BNT0 Uncharacterized protein (Fragment)2.1e-1629.91Show/hide
Query:  LVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWD--GHGVARTLKSQLLDFEPTLWMHWVKN
        LV +FY      + D V VRG  +  S+  IN +Y L D+   E +   + + +  L+ VL  VA  GA+W+    GV   L+S  L+    +W H++K+
Subjt:  LVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWD--GHGVARTLKSQLLDFEPTLWMHWVKN

Query:  RIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRKDFDEQWWARVTNTCNRRLQGSMP
        R++PT H   +S +RV+L+Y ++ G  I++G ++   +C  AA+  GA F P L+  +CR +      +EE      + D    AR+        Q    
Subjt:  RIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRKDFDEQWWARVTNTCNRRLQGSMP

Query:  QPIPTPQPSEPTAAANDLRSHRAL
        +P   P  S PTA ++   +   L
Subjt:  QPIPTPQPSEPTAAANDLRSHRAL

A0A2P5DAQ2 Uncharacterized protein1.0e-1831.44Show/hide
Query:  MTEQISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWD--GHG
        + + I Q  W+  C +P      LV +FY      + D V +RG  +  S   IN ++ L D P  E +   + +    L  VL  VA +GA+W+    G
Subjt:  MTEQISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWD--GHG

Query:  VARTLKSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEE
            L+S  L+    +W H++K+R++PT H  T+S + V L+Y ++ G  I++G ++   +C  AA+  GA F P L+TS+CR +      +EE
Subjt:  VARTLKSQLLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEE

A0A6A2WM54 Uncharacterized protein1.3e-1831.02Show/hide
Query:  KWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALF-DCLDDDFLSAVLLAVARLGAKWDGHGVAR-TLKSQ
        KW+   ++P S   +LV +FY   ++     + VRG  I F+S  IN+ + L+D+   + +A F +  D +    VL  +     +W+G   +R ++  +
Subjt:  KWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALF-DCLDDDFLSAVLLAVARLGAKWDGHGVAR-TLKSQ

Query:  LLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEV
         L     LW H++KN++MPT H+ T+SL R++L++ IM   PID+G I+V+ +     K   A   P L+T+LCR   +   + +E+
Subjt:  LLDFEPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGCAAATTTCCCAGCGTAAATGGGAAAACGTCTGCCAAAACCCTCGTAGCTACGCTCCTGCGCTAGTCCATGACTTCTACCGAGCGCAGTGGCAAGACGAGCT
TGACGAAGTCTTAGTGCGAGGCCACACCATAGCCTTTTCCTCCGCGCACATCAACAATGTATATGAGTTGCGAGATATTCCCTACGCAGAATGCAATGCGCTCTTCGACT
GTCTCGATGATGATTTCCTGAGCGCAGTTCTTCTTGCAGTGGCCAGACTTGGGGCCAAATGGGATGGGCACGGAGTTGCGAGGACTCTGAAGTCACAGCTGCTCGATTTC
GAGCCCACACTTTGGATGCATTGGGTAAAGAATCGCATCATGCCCACAATGCATGATGCCACCTTAAGCCTGCAGCGGGTCGTGCTTGTTTACTGCATCATGAAAGGAAC
CCCCATTGACCTTGGCTACATCCTCGTCGAAACTTTGTGCCAAACTGCCGCAAAACCTAAGGGCGCGAAATTTTGTCCTGGCCTGGTCACTTCTCTTTGTCGCGCATCAA
ATCTCATGCCAGCATCAGATGAAGAAGTCCGAACAATGCGGAAGGACTTCGATGAGCAATGGTGGGCGCGTGTTACCAACACTTGCAATAGGCGTCTGCAAGGAAGCATG
CCGCAACCAATCCCTACACCGCAACCCTCCGAACCTACAGCTGCGGCGAATGATCTGAGAAGTCACAGAGCCCTTGCGATTGCAGCAAGAGAGGATGTGCCAGCAGCAGG
AGTTGTTGCGCAAGCAACAAGAAGAACTATCGCAGAGAGTAAATGCCTTAGTCCTCTTCTTGATGTGATGGACGAAATCTTTTGGTCTCCTGCCTGTCACGCCAAATTTG
TTTGTGCGGCCAACCACGCAGCAAAGACCTTCTGGTACAGGCCCTTCTCAGATGCGTCCTCCAAGAGTCCCACATGCGTCGAGGAGTCCGCAACCACCCCCACCGCCACT
ACCGCAGGAATAGAAGCTATCACTTACTTTCCTTATCTTCTTTTGTTTTGGTTTAAATTCGAGGAGAGGGGTGTGGTTGGTTGGATAATCCGTGATTCCTCAGGATCTCC
TTTGGAGTTTGGATGCAAGAAAATCAATAGCCACTGGTCGATCAAGACGTTGGAAACAACAGCTATGAGAGAAGGCTTGAAGAAATACCTGGAGAGGAATCAAACGCCTA
AACCGCCGGTGATTGTTGAATCAGATGTTGGGGAGGTGATCAAAATCCTATACTTCGAATGCGAACATCTGTCGAACTCCAAGACAGTGATGAGCGAAGTAGAATCCCTT
ACGAAGTCTGCCGGCGTCATAAAATTTTCGAAATGCCCAAGAGGCATCAATACTTGTGCGCACTTCTTGGCGCAAGCGGCGACCGGTCTACTGCCAGAGACGAAGCATGT
GCCTCCTGGAGGGTCAGCCGTTGGGTGTGATAATTTTGATCTTTTTTGTAACCCTTCCATGCTAGAAGGGAAATTCTTTTGGAGGGAGGGTTGTCTCCCAGCAGTTATTG
CCTCCTTAATGGAGAAAGAGAAAAACAGAGGAAAGTTGGATCCTGTCCAGAAATGTGACCGCATATCTGGGAAGGCAAAATGGAAATGTGACCGCAATTCTGGAAAACCA
GAGACCGTTCCAAGTCGCGCGCGGGTCGTTGTTAACGAGTCTTCTTCGCACCTAACCGACCATTTTGACCCCGAAACTGACTGGGCAACCTTCCAACACCTATTTCACAG
CTTCTCAACCAATTTCTACACTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGCAAATTTCCCAGCGTAAATGGGAAAACGTCTGCCAAAACCCTCGTAGCTACGCTCCTGCGCTAGTCCATGACTTCTACCGAGCGCAGTGGCAAGACGAGCT
TGACGAAGTCTTAGTGCGAGGCCACACCATAGCCTTTTCCTCCGCGCACATCAACAATGTATATGAGTTGCGAGATATTCCCTACGCAGAATGCAATGCGCTCTTCGACT
GTCTCGATGATGATTTCCTGAGCGCAGTTCTTCTTGCAGTGGCCAGACTTGGGGCCAAATGGGATGGGCACGGAGTTGCGAGGACTCTGAAGTCACAGCTGCTCGATTTC
GAGCCCACACTTTGGATGCATTGGGTAAAGAATCGCATCATGCCCACAATGCATGATGCCACCTTAAGCCTGCAGCGGGTCGTGCTTGTTTACTGCATCATGAAAGGAAC
CCCCATTGACCTTGGCTACATCCTCGTCGAAACTTTGTGCCAAACTGCCGCAAAACCTAAGGGCGCGAAATTTTGTCCTGGCCTGGTCACTTCTCTTTGTCGCGCATCAA
ATCTCATGCCAGCATCAGATGAAGAAGTCCGAACAATGCGGAAGGACTTCGATGAGCAATGGTGGGCGCGTGTTACCAACACTTGCAATAGGCGTCTGCAAGGAAGCATG
CCGCAACCAATCCCTACACCGCAACCCTCCGAACCTACAGCTGCGGCGAATGATCTGAGAAGTCACAGAGCCCTTGCGATTGCAGCAAGAGAGGATGTGCCAGCAGCAGG
AGTTGTTGCGCAAGCAACAAGAAGAACTATCGCAGAGAGTAAATGCCTTAGTCCTCTTCTTGATGTGATGGACGAAATCTTTTGGTCTCCTGCCTGTCACGCCAAATTTG
TTTGTGCGGCCAACCACGCAGCAAAGACCTTCTGGTACAGGCCCTTCTCAGATGCGTCCTCCAAGAGTCCCACATGCGTCGAGGAGTCCGCAACCACCCCCACCGCCACT
ACCGCAGGAATAGAAGCTATCACTTACTTTCCTTATCTTCTTTTGTTTTGGTTTAAATTCGAGGAGAGGGGTGTGGTTGGTTGGATAATCCGTGATTCCTCAGGATCTCC
TTTGGAGTTTGGATGCAAGAAAATCAATAGCCACTGGTCGATCAAGACGTTGGAAACAACAGCTATGAGAGAAGGCTTGAAGAAATACCTGGAGAGGAATCAAACGCCTA
AACCGCCGGTGATTGTTGAATCAGATGTTGGGGAGGTGATCAAAATCCTATACTTCGAATGCGAACATCTGTCGAACTCCAAGACAGTGATGAGCGAAGTAGAATCCCTT
ACGAAGTCTGCCGGCGTCATAAAATTTTCGAAATGCCCAAGAGGCATCAATACTTGTGCGCACTTCTTGGCGCAAGCGGCGACCGGTCTACTGCCAGAGACGAAGCATGT
GCCTCCTGGAGGGTCAGCCGTTGGGTGTGATAATTTTGATCTTTTTTGTAACCCTTCCATGCTAGAAGGGAAATTCTTTTGGAGGGAGGGTTGTCTCCCAGCAGTTATTG
CCTCCTTAATGGAGAAAGAGAAAAACAGAGGAAAGTTGGATCCTGTCCAGAAATGTGACCGCATATCTGGGAAGGCAAAATGGAAATGTGACCGCAATTCTGGAAAACCA
GAGACCGTTCCAAGTCGCGCGCGGGTCGTTGTTAACGAGTCTTCTTCGCACCTAACCGACCATTTTGACCCCGAAACTGACTGGGCAACCTTCCAACACCTATTTCACAG
CTTCTCAACCAATTTCTACACTATATAA
Protein sequenceShow/hide protein sequence
MTEQISQRKWENVCQNPRSYAPALVHDFYRAQWQDELDEVLVRGHTIAFSSAHINNVYELRDIPYAECNALFDCLDDDFLSAVLLAVARLGAKWDGHGVARTLKSQLLDF
EPTLWMHWVKNRIMPTMHDATLSLQRVVLVYCIMKGTPIDLGYILVETLCQTAAKPKGAKFCPGLVTSLCRASNLMPASDEEVRTMRKDFDEQWWARVTNTCNRRLQGSM
PQPIPTPQPSEPTAAANDLRSHRALAIAAREDVPAAGVVAQATRRTIAESKCLSPLLDVMDEIFWSPACHAKFVCAANHAAKTFWYRPFSDASSKSPTCVEESATTPTAT
TAGIEAITYFPYLLLFWFKFEERGVVGWIIRDSSGSPLEFGCKKINSHWSIKTLETTAMREGLKKYLERNQTPKPPVIVESDVGEVIKILYFECEHLSNSKTVMSEVESL
TKSAGVIKFSKCPRGINTCAHFLAQAATGLLPETKHVPPGGSAVGCDNFDLFCNPSMLEGKFFWREGCLPAVIASLMEKEKNRGKLDPVQKCDRISGKAKWKCDRNSGKP
ETVPSRARVVVNESSSHLTDHFDPETDWATFQHLFHSFSTNFYTI