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Spg034832 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034832
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit B-like
Genome locationscaffold3:24350912..24355050
RNA-Seq ExpressionSpg034832
SyntenySpg034832
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013955 - Replication factor A, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OIT26151.1 hypothetical protein A4A49_29609 [Nicotiana attenuata]6.4e-1135Show/hide
Query:  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFI
        FN K   I+NKD+PW+  C  C  +V    N  +  C  C   V++  +Y+LKL +FD +   +IT FEA +  +GC         S KKE+SK YR  +
Subjt:  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFI

Query:  LAQGKTYKFLIRMGKKSEGD
         ++ K + FL+++  +  GD
Subjt:  LAQGKTYKFLIRMGKKSEGD

XP_009776017.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana sylvestris]3.7e-1135Show/hide
Query:  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFI
        FN+K   I+N D+PW+  CK C  +V    N  +  C  C   V++  +Y+LKL +FD +   +IT FEA +  +GC         S KKE+SK YR  +
Subjt:  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFI

Query:  LAQGKTYKFLIRMGKKSEGD
         ++ K + FL+++  +  GD
Subjt:  LAQGKTYKFLIRMGKKSEGD

XP_016476407.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum]8.3e-1135.09Show/hide
Query:  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKT
        I+NKD PW+  CK C  +V    N  +T C+ C  + V +  +Y+LKL +FD +   ++T FE+    +GC         S  KE+SK YR  +L+  K 
Subjt:  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKT

Query:  YKFLIRMGKKSEGD
        + FL+++  K+ GD
Subjt:  YKFLIRMGKKSEGD

XP_016485940.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum]8.3e-1134.21Show/hide
Query:  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKT
        I+NKD PW+  CK C  +V    N  +  C++C  + V +  +Y+LKL +FD +   ++T FE+    +GC         S KKE+ K YR  +L++ K 
Subjt:  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKT

Query:  YKFLIRMGKKSEGD
        + FL+++  K+ GD
Subjt:  YKFLIRMGKKSEGD

XP_016500091.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit A-like [Nicotiana tabacum]9.9e-1235.96Show/hide
Query:  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKT
        I+NKD PW+  CK C  +V    N  +  C+ C  + V +  KY+LKL +FD +   ++T FE+    +GC         S KKE+SK YR  +L++ K 
Subjt:  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKT

Query:  YKFLIRMGKKSEGD
        + FL+++  K+ GD
Subjt:  YKFLIRMGKKSEGD

TrEMBL top hitse value%identityAlignment
A0A1J6KWZ0 Rep_fac-A_C domain-containing protein3.1e-1135Show/hide
Query:  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFI
        FN K   I+NKD+PW+  C  C  +V    N  +  C  C   V++  +Y+LKL +FD +   +IT FEA +  +GC         S KKE+SK YR  +
Subjt:  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFI

Query:  LAQGKTYKFLIRMGKKSEGD
         ++ K + FL+++  +  GD
Subjt:  LAQGKTYKFLIRMGKKSEGD

A0A1S4AI89 replication protein A 70 kDa DNA-binding subunit B-like4.0e-1135.09Show/hide
Query:  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKT
        I+NKD PW+  CK C  +V    N  +T C+ C  + V +  +Y+LKL +FD +   ++T FE+    +GC         S  KE+SK YR  +L+  K 
Subjt:  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKT

Query:  YKFLIRMGKKSEGD
        + FL+++  K+ GD
Subjt:  YKFLIRMGKKSEGD

A0A1S4BU38 replication protein A 70 kDa DNA-binding subunit B-like1.8e-1135Show/hide
Query:  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFI
        FN+K   I+N D+PW+  CK C  +V    N  +  C  C   V++  +Y+LKL +FD +   +IT FEA +  +GC         S KKE+SK YR  +
Subjt:  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFI

Query:  LAQGKTYKFLIRMGKKSEGD
         ++ K + FL+++  +  GD
Subjt:  LAQGKTYKFLIRMGKKSEGD

A0A1S4CG46 replication protein A 70 kDa DNA-binding subunit A-like4.8e-1235.96Show/hide
Query:  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKT
        I+NKD PW+  CK C  +V    N  +  C+ C  + V +  KY+LKL +FD +   ++T FE+    +GC         S KKE+SK YR  +L++ K 
Subjt:  IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCN-DLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFILAQGKT

Query:  YKFLIRMGKKSEGD
        + FL+++  K+ GD
Subjt:  YKFLIRMGKKSEGD

A0A1U7W7M5 replication protein A 70 kDa DNA-binding subunit B-like1.8e-1135Show/hide
Query:  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFI
        FN+K   I+N D+PW+  CK C  +V    N  +  C  C   V++  +Y+LKL +FD +   +IT FEA +  +GC         S KKE+SK YR  +
Subjt:  FNLK---IVNKDNPWFEKCKLCNHRVYPNGNQKMTHCNNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGC---------SMKKEDSKIYRNFI

Query:  LAQGKTYKFLIRMGKKSEGD
         ++ K + FL+++  +  GD
Subjt:  LAQGKTYKFLIRMGKKSEGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTGACTCTGACAATTCATCTATTGGCTGTCTCTGACGAGTTTTTCAAGCCTCTCAATGTGAGCTACGACCATAGTGCTTTGATGGAAAATGCCGCAAGGAAGGT
GGTGGGGCGGATGTCATTCAAAGTGTGTTTTGGAATGGTCATGAACCAACGAAGGGACAGGAAAAACGATAGTTGCAAGCCAATTAAACTGACGCTATGGAACCCAATAA
TTTTAGCATTCAATCTTAAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCATAGAGTTTACCCCAATGGAAATCAGAAAATGACTCACTGT
AACAATTGCAATGATCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTATAATTTTTGATGGGCAAATGACTGCACATATAACTGCTTTTGAGGCTGCAGAAGTCAG
AGTTGGATGTAGTATGAAGAAGGAGGATTCTAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAGTTCCTCATTCGCATGGGCAAGAAGTCTGAAGGAG
ATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTGACTCTGACAATTCATCTATTGGCTGTCTCTGACGAGTTTTTCAAGCCTCTCAATGTGAGCTACGACCATAGTGCTTTGATGGAAAATGCCGCAAGGAAGGT
GGTGGGGCGGATGTCATTCAAAGTGTGTTTTGGAATGGTCATGAACCAACGAAGGGACAGGAAAAACGATAGTTGCAAGCCAATTAAACTGACGCTATGGAACCCAATAA
TTTTAGCATTCAATCTTAAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCATAGAGTTTACCCCAATGGAAATCAGAAAATGACTCACTGT
AACAATTGCAATGATCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTATAATTTTTGATGGGCAAATGACTGCACATATAACTGCTTTTGAGGCTGCAGAAGTCAG
AGTTGGATGTAGTATGAAGAAGGAGGATTCTAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAGTTCCTCATTCGCATGGGCAAGAAGTCTGAAGGAG
ATTGA
Protein sequenceShow/hide protein sequence
MSLTLTIHLLAVSDEFFKPLNVSYDHSALMENAARKVVGRMSFKVCFGMVMNQRRDRKNDSCKPIKLTLWNPIILAFNLKIVNKDNPWFEKCKLCNHRVYPNGNQKMTHC
NNCNDLVQFIRKYMLKLIIFDGQMTAHITAFEAAEVRVGCSMKKEDSKIYRNFILAQGKTYKFLIRMGKKSEGD