; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034840 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034840
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold3:25051602..25054012
RNA-Seq ExpressionSpg034840
SyntenySpg034840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-3063.71Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN
        EEVDNS + +QRTSVFDRIKP TT   VF+R+SM   EEENQC +ST  R SAF+RLS+STSKK RPSTS F RLK+T+DQ +R+M + + K F E N +
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN

Query:  KKLHSSIPSRMKRRFSVLINTEGS
         K+HS +PSRMKR+ SV INTEGS
Subjt:  KKLHSSIPSRMKRRFSVLINTEGS

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.3e-3163.71Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN
        EEVDNS + +QRTSVFDRIKP TT  SVF+R+S+   EEENQC  ST TR SAF+ LS+STSKK RPSTS F RLK+ +DQ +R+M +++VK F E N +
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN

Query:  KKLHSSIPSRMKRRFSVLINTEGS
         K+HS +PSRMKR+ SV INTEGS
Subjt:  KKLHSSIPSRMKRRFSVLINTEGS

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-3154.37Show/hide
Query:  EFFSKTF---HKKEKENFGTSYCIDV----------EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKK
        EFF ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TT  SVF+R+SM   EEENQC  ST  R SAF+RLS+STSKK
Subjt:  EFFSKTF---HKKEKENFGTSYCIDV----------EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKK

Query:  SRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSNKKLHSSIPSRMKRRFSVLINTEGS
         RPSTS F RLK+T+DQ +R+M +++ K F E N + K+HS +PSRMKR+ SV INTEGS
Subjt:  SRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSNKKLHSSIPSRMKRRFSVLINTEGS

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-3062.9Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN
        EEVDNS + +QRTSVFDRIKP TT  SVF+R+SM   EE+NQC  ST  R SAF+RLS+STSKK RPSTS F RLK+T+DQ +R+M +++ K F E N +
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN

Query:  KKLHSSIPSRMKRRFSVLINTEGS
         K+H+ +PSRMKR+ SV INTEGS
Subjt:  KKLHSSIPSRMKRRFSVLINTEGS

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-3062.9Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN
        EEVDNS + +QRTSVFDRIKP TT  SVF+R+SM   EE+NQC  ST  R SAF+RLS+STSKK RPSTS F RLK+T+DQ +R+M +++ K F E N +
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN

Query:  KKLHSSIPSRMKRRFSVLINTEGS
         K+H+ +PSRMKR+ SV INTEGS
Subjt:  KKLHSSIPSRMKRRFSVLINTEGS

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein3.5e-3163.71Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN
        EEVDNS + +QRTSVFDRIKP TT  SVF+R+S+   EEENQC  ST TR SAF+ LS+STSKK RPSTS F RLK+ +DQ +R+M +++VK F E N +
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN

Query:  KKLHSSIPSRMKRRFSVLINTEGS
         K+HS +PSRMKR+ SV INTEGS
Subjt:  KKLHSSIPSRMKRRFSVLINTEGS

A0A5A7TQ06 Retrotransposon gag protein1.6e-3154.37Show/hide
Query:  EFFSKTF---HKKEKENFGTSYCIDV----------EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKK
        EFF ++F   H +E     T +   +          EEVDNS + +QRTSVFDRIKP TT  SVF+R+SM   EEENQC  ST  R SAF+RLS+STSKK
Subjt:  EFFSKTF---HKKEKENFGTSYCIDV----------EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKK

Query:  SRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSNKKLHSSIPSRMKRRFSVLINTEGS
         RPSTS F RLK+T+DQ +R+M +++ K F E N + K+HS +PSRMKR+ SV INTEGS
Subjt:  SRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSNKKLHSSIPSRMKRRFSVLINTEGS

A0A5A7UI09 Retrotransposon gag protein6.0e-3162.9Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN
        EEVDNS + +QRTSVFDRIKP TT  SVF+R+SM   EE+NQC  ST  R SAF+RLS+STSKK RPSTS F RLK+T+DQ +R+M +++ K F E N +
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN

Query:  KKLHSSIPSRMKRRFSVLINTEGS
         K+H+ +PSRMKR+ SV INTEGS
Subjt:  KKLHSSIPSRMKRRFSVLINTEGS

A0A5D3BBF9 Gag protease polyprotein6.0e-3162.9Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN
        EEVDNS + +QRTS+FDRIKP TT   VF+R+SM   EEENQC  ST  R SAF+RLS+STSKK RPSTS F RLK+T+DQ +R+M +++ K F E N +
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN

Query:  KKLHSSIPSRMKRRFSVLINTEGS
         K+HS +PSRMKR+ SV INTEGS
Subjt:  KKLHSSIPSRMKRRFSVLINTEGS

A0A5D3CCI8 Retrotransposon gag protein6.0e-3162.9Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN
        EEVDNS + +QRTSVFDRIKP TT  SVF+R+SM   EE+NQC  ST  R SAF+RLS+STSKK RPSTS F RLK+T+DQ +R+M +++ K F E N +
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRKMGNMEVKLFDEVNSN

Query:  KKLHSSIPSRMKRRFSVLINTEGS
         K+H+ +PSRMKR+ SV INTEGS
Subjt:  KKLHSSIPSRMKRRFSVLINTEGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAATTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGGAACTTCCTATTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAG
GACTTCTGTCTTCGATCGCATCAAGCCTCCAACTACTCATCCTTCAGTATTCGAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTTGGTGTCCACCTCCA
CTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACCTTCAACATCTGTTTTTTATCGCCTCAAAGTAACAAGTGATCAACCTAAAAGAAAG
ATGGGCAACATGGAGGTGAAACTTTTCGATGAAGTAAACAGCAACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAGGTTCTCTGTTCTCATAAATACAGA
AGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCGCTTGGCAGCAGTTCCTTCTCTCCAAGTTCGAGGGTGTTTACGTTGTACGCTAC
TGCGTTGTTCCTTCTCCAAGTTTGAAGGTTCTTTGATGCACGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTTCTCGGGTTGCGTTGTTGCGCTACGTCCTTCTTTA
AGTTTGAAGGTTCTCACGTTGCGCTGCTGCGCTGCTTCCTTCTCCAAGTCCGAAGGTTTGCACATGTTGTTATGCTGCTTCGCTGCTGTTCCTTCTCCAAGTGCGAAGGT
TCTCAGGTTGTGCTGCTACGCTACTTCCTTCTTTAAGTTCAAAGGTTCTCACGTCGCGCTGTTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGC
AGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCTCAGAGTTTGAAGGTTCTCATGTTGTTTCGCTACAGTTCCTTCTCTCCAAGTTTG
AAGGTTCTCACATTGCTGCACTACATTCCTTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTG
CAGTTCCTTCTCTCCAAGTTCGAAGGTTCCCAAGCGGGTTCTCAAGCCGCTTCACTGTAGTTCCTTCTCTAAGTCGCTACTTCATCGTTGTTCCTTCTTTAAGTTTGAAA
CTTTCCTCCAAGTCCGAAGGTTTGCACGTGTCGTTACGTTGCTTTGCTGCGGTTCCTTCTCTCCAAGTTTGAAGGTTCTTATGTTGCATGATGTTGTGTTGACCCTTCTC
CAAATTCGAAGATTCTCATGCCACGCTGCTTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCATACTGTGCTGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCAA
GTGTTACGCTGTTTCGCTGATGCTTCCTTCTCCAAGTTCGAAGAACCCGTTGTATGCTGCTTCGCTACTTCCTTCTCTATGTTCGAAGGTTCTCATGCTACGCTGCTTTG
TTGTTCCTTCTCCAAGTTTGAAGGTTCTGCTTTATTGTAGACGTTGCAGCAGTAAAGGAGTCCAAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAATTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAACTTTGGAACTTCCTATTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAG
GACTTCTGTCTTCGATCGCATCAAGCCTCCAACTACTCATCCTTCAGTATTCGAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTTGGTGTCCACCTCCA
CTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACCTTCAACATCTGTTTTTTATCGCCTCAAAGTAACAAGTGATCAACCTAAAAGAAAG
ATGGGCAACATGGAGGTGAAACTTTTCGATGAAGTAAACAGCAACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAGGTTCTCTGTTCTCATAAATACAGA
AGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCGCTTGGCAGCAGTTCCTTCTCTCCAAGTTCGAGGGTGTTTACGTTGTACGCTAC
TGCGTTGTTCCTTCTCCAAGTTTGAAGGTTCTTTGATGCACGCTCCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTTCTCGGGTTGCGTTGTTGCGCTACGTCCTTCTTTA
AGTTTGAAGGTTCTCACGTTGCGCTGCTGCGCTGCTTCCTTCTCCAAGTCCGAAGGTTTGCACATGTTGTTATGCTGCTTCGCTGCTGTTCCTTCTCCAAGTGCGAAGGT
TCTCAGGTTGTGCTGCTACGCTACTTCCTTCTTTAAGTTCAAAGGTTCTCACGTCGCGCTGTTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGC
AGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCTCAGAGTTTGAAGGTTCTCATGTTGTTTCGCTACAGTTCCTTCTCTCCAAGTTTG
AAGGTTCTCACATTGCTGCACTACATTCCTTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTG
CAGTTCCTTCTCTCCAAGTTCGAAGGTTCCCAAGCGGGTTCTCAAGCCGCTTCACTGTAGTTCCTTCTCTAAGTCGCTACTTCATCGTTGTTCCTTCTTTAAGTTTGAAA
CTTTCCTCCAAGTCCGAAGGTTTGCACGTGTCGTTACGTTGCTTTGCTGCGGTTCCTTCTCTCCAAGTTTGAAGGTTCTTATGTTGCATGATGTTGTGTTGACCCTTCTC
CAAATTCGAAGATTCTCATGCCACGCTGCTTTGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCATACTGTGCTGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCAA
GTGTTACGCTGTTTCGCTGATGCTTCCTTCTCCAAGTTCGAAGAACCCGTTGTATGCTGCTTCGCTACTTCCTTCTCTATGTTCGAAGGTTCTCATGCTACGCTGCTTTG
TTGTTCCTTCTCCAAGTTTGAAGGTTCTGCTTTATTGTAGACGTTGCAGCAGTAAAGGAGTCCAAGTGTGA
Protein sequenceShow/hide protein sequence
MNEFFSKTFHKKEKENFGTSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTHPSVFERMSMVATEEENQCLVSTSTRPSAFQRLSVSTSKKSRPSTSVFYRLKVTSDQPKRK
MGNMEVKLFDEVNSNKKLHSSIPSRMKRRFSVLINTEGSHALRCSSFSPSSKVLMRLAAVPSLQVRGCLRCTLLRCSFSKFEGSLMHAPALLLLQVRRFSGCVVALRPSL
SLKVLTLRCCAASFSKSEGLHMLLCCFAAVPSPSAKVLRLCCYATSFFKFKGSHVALLCSFLLQVRRFSRASLQFLLSKFEGSHALRCSSFSQSLKVLMLFRYSSFSPSL
KVLTLLHYIPSLKFEGSHAASLQFFLPKFEGSHALRCSSFSPSSKVPKRVLKPLHCSSFSKSLLHRCSFFKFETFLQVRRFARVVTLLCCGSFSPSLKVLMLHDVVLTLL
QIRRFSCHAALLFLLQVRRFSYCAAALLPSPSSKVLKCYAVSLMLPSPSSKNPLYAASLLPSLCSKVLMLRCFVVPSPSLKVLLYCRRCSSKGVQV