CuGenDBv2

Gene ID	Spg034848
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	general transcription factor 3C polypeptide 5-like
Genome location	scaffold3:24860031..24866337
RNA-Seq Expression	Spg034848
Synteny	Spg034848
Gene Ontology terms	GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0000127 - transcription factor TFIIIC complex (cellular component) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR040454 - Transcription factor IIIC subunit Tfc1/Sfc1 IPR041499 - Transcription factor IIIC subunit Tfc1/Sfc1, triple barrel domain IPR042536 - TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588837.1 General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma subsp. sororia]

7.2e-67

84.56

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Query:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR
        + I KVR LQ NKLELRFRPEDPYSHPT+GELRPCSCFLLKICH KS++ EGI KVEKEVPREDE+NLDFEMVA VPEAY+FEGM DYQHVVA HADAT+
Subjt:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR

Query:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP
        RKKG+WTE+HEP LGKVNAIDVDKEDTMILVPPLFA+KDVPESLV  TP
Subjt:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP

XP_004142476.1 general transcription factor 3C polypeptide 5 isoform X2 [Cucumis sativus]

3.0e-65

86.58

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Query:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR
        + I KVR LQ NKLELRFRP DPYSHPTYGELRPCS FLLKICHSKSDT EGIMKVE EVP EDEVNLDFEMVARVPEAY+FEGMVDYQHVVAVHADAT+
Subjt:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR

Query:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP
        RKKGNW E+HEP LGK NAIDVDKEDTMILVPPLF+IKDVPE+LV  TP
Subjt:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP

XP_022927790.1 general transcription factor 3C polypeptide 5-like [Cucurbita moschata]

2.5e-67

85.23

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Query:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR
        + I KVR LQ NKLELRFRPEDPYSHPT+GELRPCSCFLLKICH KSD+ EGI KVEKEVPREDE+NLDFEMVA VPEAY+FEGM DYQHVVA HADAT+
Subjt:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR

Query:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP
        RKKG+WTE+HEP LGKVNAIDVDKEDTMILVPPLFA+KDVPESLV  TP
Subjt:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP

XP_023530657.1 general transcription factor 3C polypeptide 5-like [Cucurbita pepo subsp. pepo]

1.9e-67

85.23

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Query:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR
        + I KVR LQ NKLELRFRPEDPYSHPT+GELRPCSCFLLKICH KSD+ EGI KVEKEVPREDE+NLDFEMVA VPEAY+FEGM DYQHVVA HADAT+
Subjt:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR

Query:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP
        RKKG+WTE+HEP LGKVNAIDVDKEDTMILVPPLFA+KDVPESLV  TP
Subjt:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP

XP_038888320.1 general transcription factor 3C polypeptide 5-like [Benincasa hispida]

1.2e-69

86.58

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Query:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR
        + I KVR +Q +KLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDE NLDFEMVARVPEAY+FEGM+DYQHV+AVHADATR
Subjt:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR

Query:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP
        RKKGNW E+HEP LGK NA+DVDKEDTMILVPPLF+IKDVPE+LV  TP
Subjt:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV91 Uncharacterized protein

1.5e-65

86.58

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Query:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR
        + I KVR LQ NKLELRFRP DPYSHPTYGELRPCS FLLKICHSKSDT EGIMKVE EVP EDEVNLDFEMVARVPEAY+FEGMVDYQHVVAVHADAT+
Subjt:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR

Query:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP
        RKKGNW E+HEP LGK NAIDVDKEDTMILVPPLF+IKDVPE+LV  TP
Subjt:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP

A0A1S4E516 general transcription factor 3C polypeptide 5-like isoform X1

5.2e-63

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Query:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR
        + I KVR LQ NKLELRFRP DPYSHPTYGELRPCSC LLKICHSK DT EGIMKVE  VP EDEVNLDFEMVARVPEAY+FEGMVDYQHVVAVHADAT 
Subjt:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR

Query:  RKKGNWTEIHEPSLGK-VNAIDVDKEDTMILVPPLFAIKDVPESLVAITP
        RKKGNW E+HEP LGK  NA+DVDKEDTMILVPPLF+IKDVPE+LV  TP
Subjt:  RKKGNWTEIHEPSLGK-VNAIDVDKEDTMILVPPLFAIKDVPESLVAITP

A0A6J1DVT1 general transcription factor 3C polypeptide 5-like isoform X2

3.1e-63

81.21

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Query:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR
        + I KV  LQ NKLELRFRPEDPYSHPTYGELRPC CFLLKICHSK D IEGIMK E+EVP EDEVNL FEMVA VPEAY+FEGM DYQHVVA HADAT+
Subjt:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR

Query:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP
        RKKG+WTE+ EP LGKVN IDVDKED MILVPPLFA+KDVPESLV   P
Subjt:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP

A0A6J1EPX9 general transcription factor 3C polypeptide 5-like

1.2e-67

85.23

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Query:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR
        + I KVR LQ NKLELRFRPEDPYSHPT+GELRPCSCFLLKICH KSD+ EGI KVEKEVPREDE+NLDFEMVA VPEAY+FEGM DYQHVVA HADAT+
Subjt:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR

Query:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP
        RKKG+WTE+HEP LGKVNAIDVDKEDTMILVPPLFA+KDVPESLV  TP
Subjt:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP

A0A6J1JKL2 general transcription factor 3C polypeptide 5-like

5.6e-65

83.22

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Query:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR
        + I KVR LQ NKLELRFRPED YSHPT+GELRPCSCFLLKI H KSD+ EGI  VEKEVPREDE+NLDFEMVA VPEAY+FEGM DYQHVVA HADAT+
Subjt:  RDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATR

Query:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP
        RKKGNWTE+HEP LGKVNAIDVDKEDTMILVPP+FA+KDVPESLV  TP
Subjt:  RKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITP

SwissProt top hits

e value

%identity

Alignment

Q54GS8 General transcription factor 3C polypeptide 5

8.7e-07

21.5

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Query:  VRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKI----------------------------CHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVP
        ++S ++  L+L+FRP +P   PT+G   P    LL++                              S   T     + +++ P+E+E   D  ++A VP
Subjt:  VRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKI----------------------------CHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVP

Query:  EAYYFEGMVDYQHVVAVHADATRRKKGNWTEIHEPSLGKVNAI----------------DVDKEDTMILVPPLFAIKDVPESLVAITPQNSGFSFQTTSF
            F+G+ D+Q+++    + T+ +  N  +    S  K   I                ++ K++ M L+PPLF+  D P++ +     N+ F   +  F
Subjt:  EAYYFEGMVDYQHVVAVHADATRRKKGNWTEIHEPSLGKVNAI----------------DVDKEDTMILVPPLFAIKDVPESLVAITPQNSGFSFQTTSF

Q8R2T8 General transcription factor 3C polypeptide 5

1.6e-05

24.86

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Query:  KLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATRRKKGNWTEIHEP
        +LEL FRP+DPY HP        S  LL+I   ++    G++  E       +V  + E++  +   Y F+GM D+Q+ +AVH +A  +    +  +   
Subjt:  KLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATRRKKGNWTEIHEP

Query:  SLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITPQNSGFSFQTTSFKGFYQPADHNERFTDLNTENFPES
           K       +E  + + PP+F+  D        TP +  +  +T   +G++ P    E    L+    P +
Subjt:  SLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITPQNSGFSFQTTSFKGFYQPADHNERFTDLNTENFPES

Q9Y5Q8 General transcription factor 3C polypeptide 5

6.7e-07

30.37

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Query:  KLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATRRKKGNWTEIHEP
        +LEL FRP+DPY HP        S  LL+I   ++   +G++  E       EV  D E++  +   Y F+GM D+Q+ +AVH +A  +        H  
Subjt:  KLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATRRKKGNWTEIHEP

Query:  SLGKVNAIDVDKED------TMILVPPLFAIKDVP
           KV  +  +KE        + + PP+F+  D P
Subjt:  SLGKVNAIDVDKED------TMILVPPLFAIKDVP

Arabidopsis top hits

e value

%identity

Alignment

AT3G49410.1 Transcription factor IIIC, subunit 5

7.5e-30

41.4

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Query:  VRDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHS--KSDTIEGIMKVEKEVPRED-EVNLDFEMVARVPEAYYFEGMVDYQHVVAVHA
        ++ I + R    NKLELRFRPEDPY+HP  GE RPCS FLL+I     K    + ++   ++V  E+    L  ++VAR+ E+++F+GM DYQHV+ +HA
Subjt:  VRDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHS--KSDTIEGIMKVEKEVPRED-EVNLDFEMVARVPEAYYFEGMVDYQHVVAVHA

Query:  DATRRKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITPQNSG
        D  ++KK  W ++ +P  GK + + +  ED M+L+P  FA KD+P+++    P  SG
Subjt:  DATRRKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITPQNSG

AT5G24450.1 Transcription factor IIIC, subunit 5

3.5e-27

42.41

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Query:  VRDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHS--KSDTI---EGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAV
        ++ I   R    NKLEL FRPEDP +HP YGE R C+ FLLKI     K D++   + ++        E    L  ++VARV E+Y F+GMVDYQHV+ +
Subjt:  VRDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHS--KSDTI---EGIMKVEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAV

Query:  HADATRRKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITPQNS
        HAD  ++KK  W E+ +   GK + +D+  ED M+L+P  F+ KD P++LV   P  S
Subjt:  HADATRRKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITPQNS

Sequences

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CDS sequence

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ATGGTTATTCTCCGGGAGACCAAGCTGGCCTTCATTGATAGGCTCACTGTCAAATCGTTGTGGAGTGCTCGTGATATTAGTTGGACCTCCTTGGATGCTTCTGGATCATC
AGGGGGTATTTATGGCCCCTCCACCCACAAAGAGAGGCCCCTATTTTGGCAAGAGCTATACGACCTGTCCTATCTGTGCTCCGACCATTGGTTGCTTGTTGGTGACTTTA
TTGTTTCCCGATGGTTGACCCGTAGCAAGAACGCCACAGTGAGAGAAGCTTGGAATTCTAATTGCTCATTTTGGGATCTCCAACTTGGTAGACATTTAAAGGACGACGAA
GCCTCTGAATGGGTGGACTTAAATGTTATCCTTGATCCCATCGTCCTAGCTCAAACAGTAGATTCGTGGATATGGCCCCTTAGTGCCAACGGTCTTTTCTCCACGAAATC
CTTAATGGCCGATATGGGTAACACCACCACCATTCTTTTGGAGAATCATCTTGTTCGGGACATTTGGAAGGTTCGTAGTCTCCAACAAAATAAGTTAGAGCTTCGCTTTA
GACCTGAAGACCCATATTCACATCCAACGTATGGGGAGCTTCGTCCATGCAGTTGTTTTCTTTTGAAAATATGTCATTCAAAAAGTGATACTATTGAGGGAATCATGAAA
GTTGAAAAGGAAGTACCTAGAGAAGATGAAGTAAACCTTGATTTTGAGATGGTTGCTCGCGTGCCTGAAGCATATTATTTTGAGGGCATGGTTGACTACCAACATGTTGT
TGCTGTTCATGCGGATGCTACACGGAGGAAGAAGGGGAACTGGACAGAAATACACGAGCCATCTTTAGGGAAGGTTAATGCCATTGACGTGGACAAGGAGGATACTATGA
TTTTAGTTCCTCCACTATTTGCAATTAAGGATGTGCCTGAAAGTTTAGTTGCTATTACGCCACAGAACTCTGGCTTTTCCTTTCAAACCACCTCCTTCAAGGGCTTCTAT
CAACCAGCTGACCACAATGAGCGGTTTACAGATCTGAATACCGAAAACTTCCCCGAATCTGTTCCAGACCTTAGCAGCAAATTCACAATGTAA

mRNA sequence

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Protein sequence

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MVILRETKLAFIDRLTVKSLWSARDISWTSLDASGSSGGIYGPSTHKERPLFWQELYDLSYLCSDHWLLVGDFIVSRWLTRSKNATVREAWNSNCSFWDLQLGRHLKDDE
ASEWVDLNVILDPIVLAQTVDSWIWPLSANGLFSTKSLMADMGNTTTILLENHLVRDIWKVRSLQQNKLELRFRPEDPYSHPTYGELRPCSCFLLKICHSKSDTIEGIMK
VEKEVPREDEVNLDFEMVARVPEAYYFEGMVDYQHVVAVHADATRRKKGNWTEIHEPSLGKVNAIDVDKEDTMILVPPLFAIKDVPESLVAITPQNSGFSFQTTSFKGFY
QPADHNERFTDLNTENFPESVPDLSSKFTM

Spg034848 (gene) of Sponge gourd (cylindrica) v1 genome