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Spg034901 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034901
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Genome locationscaffold3:26068400..26071796
RNA-Seq ExpressionSpg034901
SyntenySpg034901
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060627.1 Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]5.0e-1441.8Show/hide
Query:  TTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLI--RATTTSVEVNPNTSQAEAGATSSGVVASEAAESSHTLENY--
        T FSNPPLNQLLNQ++++KLDRGN+LLWK LALPI++SY+ EGHLTG+ PC  K I  +   +  E++      +  ++ S    +   +    L +Y  
Subjt:  TTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLI--RATTTSVEVNPNTSQAEAGATSSGVVASEAAESSHTLENY--

Query:  --GWQFKSSLA-FSLDLKKTTY
          GW + S  A  +  LK  T+
Subjt:  --GWQFKSSLA-FSLDLKKTTY

KAA0066132.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa]4.6e-1552.69Show/hide
Query:  TTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATTTSVEVNPNTSQAEAGATSSGVVASEAAESS
        T  T+F+NPPLNQ+LNQ+ TIKLDR N+LLWK LALPIL+ Y+LEGHLTG+KPC  K +  T+++     N S  E G         + A SS
Subjt:  TTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATTTSVEVNPNTSQAEAGATSSGVVASEAAESS

KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]4.6e-1555.06Show/hide
Query:  ATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATT---TSVEVNPNTSQAEAGATSSGVV
        AT  T+F+NP LNQ+LNQ+ TIKLDRGN+LLWK LALPIL+SY+L  HL G+ PCL K+I  TT    S+  N      E  ++S+ VV
Subjt:  ATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATT---TSVEVNPNTSQAEAGATSSGVV

XP_016900937.1 PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]6.0e-1552.48Show/hide
Query:  SSMNSA------ATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATT---TSVEVNPNTSQAEAGATSSGV
        SSM +A      AT  T+F+NP LNQ+LNQ+ TIKLDRGN+LLWK LALPIL+SY+L  HL G+ PCL K+I  TT    S+  N      E  ++S+ V
Subjt:  SSMNSA------ATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATT---TSVEVNPNTSQAEAGATSSGV

Query:  V
        V
Subjt:  V

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]6.0e-1558.67Show/hide
Query:  AATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATTTSVEVNPNTS
        A  +G  F++PPLNQLLNQ+ +IK+DRGNFLLW+NLALPILRSY+L  +LTGDKPC    +  T T   +  +TS
Subjt:  AATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATTTSVEVNPNTS

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911162.9e-1552.48Show/hide
Query:  SSMNSA------ATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATT---TSVEVNPNTSQAEAGATSSGV
        SSM +A      AT  T+F+NP LNQ+LNQ+ TIKLDRGN+LLWK LALPIL+SY+L  HL G+ PCL K+I  TT    S+  N      E  ++S+ V
Subjt:  SSMNSA------ATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATT---TSVEVNPNTSQAEAGATSSGV

Query:  V
        V
Subjt:  V

A0A5A7V1E0 Reverse transcriptase, RNA-dependent DNA polymerase2.4e-1441.8Show/hide
Query:  TTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLI--RATTTSVEVNPNTSQAEAGATSSGVVASEAAESSHTLENY--
        T FSNPPLNQLLNQ++++KLDRGN+LLWK LALPI++SY+ EGHLTG+ PC  K I  +   +  E++      +  ++ S    +   +    L +Y  
Subjt:  TTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLI--RATTTSVEVNPNTSQAEAGATSSGVVASEAAESSHTLENY--

Query:  --GWQFKSSLA-FSLDLKKTTY
          GW + S  A  +  LK  T+
Subjt:  --GWQFKSSLA-FSLDLKKTTY

A0A5A7VCS1 Putative leucine-rich repeat receptor-like protein kinase2.2e-1552.69Show/hide
Query:  TTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATTTSVEVNPNTSQAEAGATSSGVVASEAAESS
        T  T+F+NPPLNQ+LNQ+ TIKLDR N+LLWK LALPIL+ Y+LEGHLTG+KPC  K +  T+++     N S  E G         + A SS
Subjt:  TTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATTTSVEVNPNTSQAEAGATSSGVVASEAAESS

A0A5A7VPY0 Uncharacterized protein2.2e-1555.06Show/hide
Query:  ATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATT---TSVEVNPNTSQAEAGATSSGVV
        AT  T+F+NP LNQ+LNQ+ TIKLDRGN+LLWK LALPIL+SY+L  HL G+ PCL K+I  TT    S+  N      E  ++S+ VV
Subjt:  ATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATT---TSVEVNPNTSQAEAGATSSGVV

A0A6J1DCW4 uncharacterized protein LOC1110195982.9e-1558.67Show/hide
Query:  AATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATTTSVEVNPNTS
        A  +G  F++PPLNQLLNQ+ +IK+DRGNFLLW+NLALPILRSY+L  +LTGDKPC    +  T T   +  +TS
Subjt:  AATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATTTSVEVNPNTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCACCGTCAATTCCTCCATGAATTCCGCCGCAACTACTGGAACAACCTTCAGCAATCCTCCGTTGAATCAGCTCCTGAATCAAGTCAACACTATTAAATTGGATCG
TGGTAATTTCCTTCTCTGGAAGAACCTAGCACTGCCAATTCTCCGAAGTTACAGATTGGAAGGTCACCTGACTGGTGACAAGCCGTGCCTGTCGAAACTTATTCGAGCAA
CAACCACAAGTGTAGAAGTGAATCCGAATACCTCTCAAGCTGAAGCTGGTGCAACAAGCTCTGGCGTTGTCGCAAGTGAAGCGGCTGAATCATCGCATACCCTAGAGAAC
TATGGGTGGCAATTCAAGAGCTCTTTGGCGTTCAGTCTCGATCTGAAGAAGACTACCTATGCCATGTATTTCAGCAGTGCAGGAAAGGTTGGGTACCTTATCCTGGTAAC
ACTATGTGATACAGCTCGCTTTGTATTTGATACAGACGTATTGATCCAAAGCGTCCATGTAGTAGACATGCGAGCGGAGGTATCCTATGCAATGACATGGGTGAGAGTGG
CCAATACGCCGACTCAATATGCCTTCTTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTA
GATGAGTCTGTGATTACGGACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGATAAGAGTTCAGCTATGGGTCTTTA
G
mRNA sequenceShow/hide mRNA sequence
ATGACCACCGTCAATTCCTCCATGAATTCCGCCGCAACTACTGGAACAACCTTCAGCAATCCTCCGTTGAATCAGCTCCTGAATCAAGTCAACACTATTAAATTGGATCG
TGGTAATTTCCTTCTCTGGAAGAACCTAGCACTGCCAATTCTCCGAAGTTACAGATTGGAAGGTCACCTGACTGGTGACAAGCCGTGCCTGTCGAAACTTATTCGAGCAA
CAACCACAAGTGTAGAAGTGAATCCGAATACCTCTCAAGCTGAAGCTGGTGCAACAAGCTCTGGCGTTGTCGCAAGTGAAGCGGCTGAATCATCGCATACCCTAGAGAAC
TATGGGTGGCAATTCAAGAGCTCTTTGGCGTTCAGTCTCGATCTGAAGAAGACTACCTATGCCATGTATTTCAGCAGTGCAGGAAAGGTTGGGTACCTTATCCTGGTAAC
ACTATGTGATACAGCTCGCTTTGTATTTGATACAGACGTATTGATCCAAAGCGTCCATGTAGTAGACATGCGAGCGGAGGTATCCTATGCAATGACATGGGTGAGAGTGG
CCAATACGCCGACTCAATATGCCTTCTTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTA
GATGAGTCTGTGATTACGGACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGATAAGAGTTCAGCTATGGGTCTTTA
G
Protein sequenceShow/hide protein sequence
MTTVNSSMNSAATTGTTFSNPPLNQLLNQVNTIKLDRGNFLLWKNLALPILRSYRLEGHLTGDKPCLSKLIRATTTSVEVNPNTSQAEAGATSSGVVASEAAESSHTLEN
YGWQFKSSLAFSLDLKKTTYAMYFSSAGKVGYLILVTLCDTARFVFDTDVLIQSVHVVDMRAEVSYAMTWVRVANTPTQYAFFFGDKTEWEAGDMTTQEGIHSFPLLGEV
DESVITDTREGLTYRYRSISVDTEMFYSDKSSAMGL