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Spg034954 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034954
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiongeneral transcription factor 3C polypeptide 5-like
Genome locationscaffold3:24849000..24851243
RNA-Seq ExpressionSpg034954
SyntenySpg034954
Gene Ontology termsGO:0006384 - transcription initiation from RNA polymerase III promoter (biological process)
GO:0000127 - transcription factor TFIIIC complex (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR042536 - TFIIIC, subcomplex tauA subunit Sfc1, triple barrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588837.1 General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma subsp. sororia]7.1e-1388.89Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILK
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
KAG7022593.1 General transcription factor 3C polypeptide 5, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-1388.89Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILK
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
XP_022927790.1 general transcription factor 3C polypeptide 5-like [Cucurbita moschata]7.1e-1388.89Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILK
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
XP_022989615.1 general transcription factor 3C polypeptide 5-like [Cucurbita maxima]5.4e-1391.11Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRAIETLGG QSILK
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
XP_023530657.1 general transcription factor 3C polypeptide 5-like [Cucurbita pepo subsp. pepo]7.1e-1388.89Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILK
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
TrEMBL top hitse value%identityAlignment
A0A1S3CMW8 general transcription factor 3C polypeptide 5-like isoform X21.0e-1286.67Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
        MGKLKDNTISG LP A++FAVHYPGYPSSK RAIE+LGGTQSILK
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
A0A5D3DYQ3 General transcription factor 3C polypeptide 5-like isoform X17.6e-1383.33Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGE
        MGKLKDNTISG LP A++FAVHYPGYPSSK RAIE+LGGTQSILK  E
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGE
A0A6J1DTW8 general transcription factor 3C polypeptide 5-like isoform X11.3e-1286.67Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
        MGKL+DNTISG LPT  +FAVHYPGYP SKRRAIETLGGTQSILK
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
A0A6J1EPX9 general transcription factor 3C polypeptide 5-like3.4e-1388.89Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRA+ETLGG QSILK
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
A0A6J1JKL2 general transcription factor 3C polypeptide 5-like2.6e-1391.11Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
        MGKLKDNTISG LPTA+ FAVHYPGYPSSKRRAIETLGG QSILK
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G49410.1 Transcription factor IIIC, subunit 51.6e-1060.42Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGE
        MG +++ TISGTLP+  +F VH+PGYPSS  RAIETLGG Q I +  E
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGE
AT5G24450.1 Transcription factor IIIC, subunit 52.7e-1058Show/hide
Query:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGEVT
        MG +++ TISG LP+  +F VHYPGYPSS  RA+ETLGG Q I    E T
Subjt:  MGKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGEVT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATGGTGGGTGGAGTAATCAAAGCCAGCCACGCTTCGTCTGGCTTCGGCTTCGTCTTCGTCTTCTTCAACTGGCTTCGTCTTCATCTGGCATCTTCGTCTTCGCAGTTAT
CCGCTTGCTCCTTCTTCACGAGGGGTTTCTTCTCCGCTCCGCCGCACGAACTTCTTCTCCACGCTTTGTCTTCTTCAAATTGCAGGAATCTCAGGACGATGTTAAGCTTA
TGTGTAGACACCTTTTCGTGCACCAGTTGACCTTCAGGCATGTTTTCATGCACCATGTTTTCATGCACCAGTTGCTCCATCAAGTTAGGTCGGTTAGAAAACTGAGAATG
GGGAAGCTGAAAGACAACACTATCTCAGGGACCTTACCTACTGCCCGGAGTTTTGCAGTTCACTATCCTGGTTATCCTTCATCCAAGCGACGGGCAATTGAAACTCTCGG
AGGAACACAATCAATTCTCAAGGGAGGAGAGGTTACCATCTTACTAGCTCACTCGGATGAGCTGGGTTTAGTGTTTTGTGACTCTGCTGCTAGTGGTTGTCTGTGCTTGT
TGCTGTTTTTCTGCGTTATTTTGTGA
mRNA sequenceShow/hide mRNA sequence
TATGGTGGGTGGAGTAATCAAAGCCAGCCACGCTTCGTCTGGCTTCGGCTTCGTCTTCGTCTTCTTCAACTGGCTTCGTCTTCATCTGGCATCTTCGTCTTCGCAGTTAT
CCGCTTGCTCCTTCTTCACGAGGGGTTTCTTCTCCGCTCCGCCGCACGAACTTCTTCTCCACGCTTTGTCTTCTTCAAATTGCAGGAATCTCAGGACGATGTTAAGCTTA
TGTGTAGACACCTTTTCGTGCACCAGTTGACCTTCAGGCATGTTTTCATGCACCATGTTTTCATGCACCAGTTGCTCCATCAAGTTAGGTCGGTTAGAAAACTGAGAATG
GGGAAGCTGAAAGACAACACTATCTCAGGGACCTTACCTACTGCCCGGAGTTTTGCAGTTCACTATCCTGGTTATCCTTCATCCAAGCGACGGGCAATTGAAACTCTCGG
AGGAACACAATCAATTCTCAAGGGAGGAGAGGTTACCATCTTACTAGCTCACTCGGATGAGCTGGGTTTAGTGTTTTGTGACTCTGCTGCTAGTGGTTGTCTGTGCTTGT
TGCTGTTTTTCTGCGTTATTTTGTGA
Protein sequenceShow/hide protein sequence
YGGWSNQSQPRFVWLRLRLRLLQLASSSSGIFVFAVIRLLLLHEGFLLRSAARTSSPRFVFFKLQESQDDVKLMCRHLFVHQLTFRHVFMHHVFMHQLLHQVRSVRKLRM
GKLKDNTISGTLPTARSFAVHYPGYPSSKRRAIETLGGTQSILKGGEVTILLAHSDELGLVFCDSAASGCLCLLLFFCVIL