; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034972 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034972
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold3:27019139..27022508
RNA-Seq ExpressionSpg034972
SyntenySpg034972
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013723.1 hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-3742.92Show/hide
Query:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR
        MFL++L++  PL DAT+L T I+ + D+  +  M S+IASH +SPR FVA L +    F +YSVD  ++S +SL SF DA++ G  FSS+++H+LE   +
Subjt:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR

Query:  IILRFET-SRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQL
        +ILR+E  S + P L  EL LSP +    GQV Y K F++NS+  R+I+    ++HD  + V  T ++VKFS+ S EI  +KE+G C I+G   + E +L
Subjt:  IILRFET-SRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQL

Query:  LITLHPTLFFINLSTQAQR
         IT  P +FF+N + +A R
Subjt:  LITLHPTLFFINLSTQAQR

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]5.4e-4143.38Show/hide
Query:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR
        MFL+RLE+  PL DAT+L   +A + D+  +P M  II S+RS    FVA L + +  F ++SVD   +S +SL  F DA++ G  FSS+T+H+L+  N+
Subjt:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR

Query:  IILRFETSRH-IPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQL
        ++LRFET  H +P L +EL LSP +    GQV Y   F++ S   RRI+    ++H  T+ VT+T SQVKFS+ S EII +KE G C+I+G   +VE +L
Subjt:  IILRFETSRH-IPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQL

Query:  LITLHPTLFFINLSTQAQR
         + L P +FF+N + +A +
Subjt:  LITLHPTLFFINLSTQAQR

XP_022145570.1 uncharacterized protein LOC111014988 [Momordica charantia]5.4e-4147.89Show/hide
Query:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR
        MFLIRL+ I PLFDA    T IA   D+  SP  F II S  S P  F+A L +   FF  ++VD  H S I L S    L+ G  + ++T H+LE  NR
Subjt:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR

Query:  IILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQLL
        ++LRFE SR++P+ R EL LSP+E+   G++ Y    SI S+ FR IVT  S Y +  IC TLTDSQVKFSV + EII +KE G+C I+   R VE +  
Subjt:  IILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQLL

Query:  ITLHPTLFFINLS
         TLHPT FF +L+
Subjt:  ITLHPTLFFINLS

XP_022156149.1 uncharacterized protein LOC111023105 [Momordica charantia]4.0e-3643.3Show/hide
Query:  TMFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPIN
        TMF IR+  I  L  AT+  T IADEV + ++P +FS+IASHRSS   F  VL + ++FF  YSV   H S IS+H+F  AL+      S+T+HI + IN
Subjt:  TMFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPIN

Query:  RIILRFETSRHIPQLRYEL--TLSPTEDM---VFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQ
        R ILRFE S H  + R+EL  +L P +D     FG++ Y + F I+ + F +I+  FS++ D+T+ VT TDS+V FS  +  +   KE G+C ILG G  
Subjt:  RIILRFETSRHIPQLRYEL--TLSPTEDM---VFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQ

Query:  VEIQLLITLHPTLFFINLSTQAQR
           Q LIT+ P +FF+ ++ Q+Q+
Subjt:  VEIQLLITLHPTLFFINLSTQAQR

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]1.2e-4044.95Show/hide
Query:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR
        MFL+RL+   P F AT+    IA E D+  +P  FSI  S++  PR FVA L +  + F +Y VD  H S ISL SF DAL+ G    S+T+H+L  IN+
Subjt:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR

Query:  IILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQLL
        +ILRFE+S H PQ+R+EL+L P+++   G++ Y K FSI+S+  RR++    ++H  +ICVT T SQVKFS+ S EI+ +KE  EC I+G   + E ++ 
Subjt:  IILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQLL

Query:  ITLHPTLFFINLSTQAQR
        I L+P LFF+N +    R
Subjt:  ITLHPTLFFINLSTQAQR

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980102.6e-4143.38Show/hide
Query:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR
        MFL+RLE+  PL DAT+L   +A + D+  +P M  II S+RS    FVA L + +  F ++SVD   +S +SL  F DA++ G  FSS+T+H+L+  N+
Subjt:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR

Query:  IILRFETSRH-IPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQL
        ++LRFET  H +P L +EL LSP +    GQV Y   F++ S   RRI+    ++H  T+ VT+T SQVKFS+ S EII +KE G C+I+G   +VE +L
Subjt:  IILRFETSRH-IPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQL

Query:  LITLHPTLFFINLSTQAQR
         + L P +FF+N + +A +
Subjt:  LITLHPTLFFINLSTQAQR

A0A1S4E4N8 uncharacterized protein LOC1035022634.3e-3648.9Show/hide
Query:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR
        MFL+RL+   PLFDAT+    IA E D+  +P  FSIIAS+R SPR FVA L +    F +Y VD  H S ISL SF DAL+ G    S+T+H+L  I +
Subjt:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR

Query:  IILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKE
        +ILRFE+S H P++ +EL+L+P+++   G+V Y K FSI+S+  RR++    ++H  +ICVT T SQVKFS+ S EI+ +KE
Subjt:  IILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKE

A0A6J1CUU8 uncharacterized protein LOC1110149882.6e-4147.89Show/hide
Query:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR
        MFLIRL+ I PLFDA    T IA   D+  SP  F II S  S P  F+A L +   FF  ++VD  H S I L S    L+ G  + ++T H+LE  NR
Subjt:  MFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPINR

Query:  IILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQLL
        ++LRFE SR++P+ R EL LSP+E+   G++ Y    SI S+ FR IVT  S Y +  IC TLTDSQVKFSV + EII +KE G+C I+   R VE +  
Subjt:  IILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQLL

Query:  ITLHPTLFFINLS
         TLHPT FF +L+
Subjt:  ITLHPTLFFINLS

A0A6J1DSH6 uncharacterized protein LOC1110231051.9e-3643.3Show/hide
Query:  TMFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPIN
        TMF IR+  I  L  AT+  T IADEV + ++P +FS+IASHRSS   F  VL + ++FF  YSV   H S IS+H+F  AL+      S+T+HI + IN
Subjt:  TMFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPIN

Query:  RIILRFETSRHIPQLRYEL--TLSPTEDM---VFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQ
        R ILRFE S H  + R+EL  +L P +D     FG++ Y + F I+ + F +I+  FS++ D+T+ VT TDS+V FS  +  +   KE G+C ILG G  
Subjt:  RIILRFETSRHIPQLRYEL--TLSPTEDM---VFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQ

Query:  VEIQLLITLHPTLFFINLSTQAQR
           Q LIT+ P +FF+ ++ Q+Q+
Subjt:  VEIQLLITLHPTLFFINLSTQAQR

A0A6J1KIW5 uncharacterized protein LOC1114948741.2e-3540.37Show/hide
Query:  TMFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPIN
        +MFL+RL+   PL D T+    IA E D+  +P    +  S R SPR F+A L I    F  YSV+  H S ISL S  DAL+     S++T+H+LE  N
Subjt:  TMFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTISLHSFRDALIQGCQFSSVTMHILEPIN

Query:  RIILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQL
         ++LRFET  H PQLR++  L P ++    ++ Y K  +++S   R+++    ++H  ++CVT+T S+V+FS+ S E+IF KE G CEILG       + 
Subjt:  RIILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKETGECEILGDGRQVEIQL

Query:  LITLHPTLFFINLSTQAQ
         I L+P LFF+NL+   Q
Subjt:  LITLHPTLFFINLSTQAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGTGGGCAAGGGAAGAAGGCTCTCCAATATAAAAGAAGCCAAATCAAATGGGAAAAAAACAGAGTTGCTTAAACTTGAGCAATACCATTTTGACATCACCAACCA
CACCATGTTCTTGATCAGGCTCGAGCGCATTATTCCTCTTTTCGACGCAACCACCCTATTCACTTTCATTGCCGACGAAGTCGACCTCAATGTGTCGCCGCCGATGTTCT
CGATAATCGCCTCGCACCGTTCATCCCCTCGGGCCTTCGTCGCAGTGCTGCACATCCTGCAGTCATTCTTCGCCCACTACTCCGTCGATTGGATTCACAATTCAACGATC
TCCCTCCACTCCTTCCGAGATGCTTTGATCCAAGGCTGCCAATTTTCTTCCGTCACCATGCACATCCTCGAACCCATCAATCGAATCATCCTTAGATTCGAAACTTCAAG
ACATATTCCACAACTGCGTTATGAACTGACATTGTCGCCTACGGAAGACATGGTTTTTGGCCAAGTTTCCTACGTGAAATTGTTCTCAATTAATTCGGAAAGGTTTAGGC
GCATTGTAACAGCATTTTCTGTGTACCATGATCAAACAATTTGTGTTACTCTAACGGATTCACAAGTCAAGTTCTCCGTTGGATCTGTGGAGATAATTTTTAGCAAAGAG
ACAGGTGAATGTGAAATTCTAGGTGATGGACGACAAGTTGAAATCCAATTGCTAATCACCCTTCATCCCACGTTGTTTTTCATTAATTTGTCAACTCAAGCGCAAAGGAA
AGGGATGAATATTTTTCCCTTTGTGGCAAGAGAGGGAACGAATGGGGCCAAGCCAAAAGCTCGTCAGAGTCACAGATTGGCCATTGAGGTTGCGCTGTCCATGATACCTG
TACCAGCCGTGAATGAGCTTCCACCTCCTCGAGTGGGAGGTATTCGGATTGCTGAGCCAGGGGACGGCCCAGGTCGACGATCCAATGCCCCATTGACTCCGGTGTCCTAC
TCTCTATCTGGCAAACCGGATAGAAAATCTCAGGACAAAGAGAAGATCGTGGAAATGGCCACTACATTCAGAGGTGTTCCCTGTTTTGCTTCTCAGTGGCGGCCGGAGAG
GATTATCGGAGATCAACTTCCGGCGAATGTCAAACCGGCGAGTCAAAATCAATGGGTGGCGAGTTCTTCGGGCGTTACATCCGTTCCAAATCCATCGGTTATGAAAGAGA
AGGTGGTAATTGAAGGGAACAGCCCATTTATTAGCCCACTTAATGAGGAAGGCATTTTAGAGGAGTGCAACAGGCGGTTATCTCAGACATTTATGTCCCTGGTTCAATCC
AATGAGAAGCAGATGATGGGCCTGGCTGCTAATAAAGCCCATGAGAGTGATGATGAAGATTCTATTGAAAGGGATCTTGAAATGCTGGAGGATTTTGAGTTGGACAGACC
AGAAAAAAAAAGATTGGGCCGAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGTGGGCAAGGGAAGAAGGCTCTCCAATATAAAAGAAGCCAAATCAAATGGGAAAAAAACAGAGTTGCTTAAACTTGAGCAATACCATTTTGACATCACCAACCA
CACCATGTTCTTGATCAGGCTCGAGCGCATTATTCCTCTTTTCGACGCAACCACCCTATTCACTTTCATTGCCGACGAAGTCGACCTCAATGTGTCGCCGCCGATGTTCT
CGATAATCGCCTCGCACCGTTCATCCCCTCGGGCCTTCGTCGCAGTGCTGCACATCCTGCAGTCATTCTTCGCCCACTACTCCGTCGATTGGATTCACAATTCAACGATC
TCCCTCCACTCCTTCCGAGATGCTTTGATCCAAGGCTGCCAATTTTCTTCCGTCACCATGCACATCCTCGAACCCATCAATCGAATCATCCTTAGATTCGAAACTTCAAG
ACATATTCCACAACTGCGTTATGAACTGACATTGTCGCCTACGGAAGACATGGTTTTTGGCCAAGTTTCCTACGTGAAATTGTTCTCAATTAATTCGGAAAGGTTTAGGC
GCATTGTAACAGCATTTTCTGTGTACCATGATCAAACAATTTGTGTTACTCTAACGGATTCACAAGTCAAGTTCTCCGTTGGATCTGTGGAGATAATTTTTAGCAAAGAG
ACAGGTGAATGTGAAATTCTAGGTGATGGACGACAAGTTGAAATCCAATTGCTAATCACCCTTCATCCCACGTTGTTTTTCATTAATTTGTCAACTCAAGCGCAAAGGAA
AGGGATGAATATTTTTCCCTTTGTGGCAAGAGAGGGAACGAATGGGGCCAAGCCAAAAGCTCGTCAGAGTCACAGATTGGCCATTGAGGTTGCGCTGTCCATGATACCTG
TACCAGCCGTGAATGAGCTTCCACCTCCTCGAGTGGGAGGTATTCGGATTGCTGAGCCAGGGGACGGCCCAGGTCGACGATCCAATGCCCCATTGACTCCGGTGTCCTAC
TCTCTATCTGGCAAACCGGATAGAAAATCTCAGGACAAAGAGAAGATCGTGGAAATGGCCACTACATTCAGAGGTGTTCCCTGTTTTGCTTCTCAGTGGCGGCCGGAGAG
GATTATCGGAGATCAACTTCCGGCGAATGTCAAACCGGCGAGTCAAAATCAATGGGTGGCGAGTTCTTCGGGCGTTACATCCGTTCCAAATCCATCGGTTATGAAAGAGA
AGGTGGTAATTGAAGGGAACAGCCCATTTATTAGCCCACTTAATGAGGAAGGCATTTTAGAGGAGTGCAACAGGCGGTTATCTCAGACATTTATGTCCCTGGTTCAATCC
AATGAGAAGCAGATGATGGGCCTGGCTGCTAATAAAGCCCATGAGAGTGATGATGAAGATTCTATTGAAAGGGATCTTGAAATGCTGGAGGATTTTGAGTTGGACAGACC
AGAAAAAAAAAGATTGGGCCGAACATGA
Protein sequenceShow/hide protein sequence
MGVGKGRRLSNIKEAKSNGKKTELLKLEQYHFDITNHTMFLIRLERIIPLFDATTLFTFIADEVDLNVSPPMFSIIASHRSSPRAFVAVLHILQSFFAHYSVDWIHNSTI
SLHSFRDALIQGCQFSSVTMHILEPINRIILRFETSRHIPQLRYELTLSPTEDMVFGQVSYVKLFSINSERFRRIVTAFSVYHDQTICVTLTDSQVKFSVGSVEIIFSKE
TGECEILGDGRQVEIQLLITLHPTLFFINLSTQAQRKGMNIFPFVAREGTNGAKPKARQSHRLAIEVALSMIPVPAVNELPPPRVGGIRIAEPGDGPGRRSNAPLTPVSY
SLSGKPDRKSQDKEKIVEMATTFRGVPCFASQWRPERIIGDQLPANVKPASQNQWVASSSGVTSVPNPSVMKEKVVIEGNSPFISPLNEEGILEECNRRLSQTFMSLVQS
NEKQMMGLAANKAHESDDEDSIERDLEMLEDFELDRPEKKRLGRT