; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg035012 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035012
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
Genome locationscaffold3:24398009..24407064
RNA-Seq ExpressionSpg035012
SyntenySpg035012
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576064.1 Chromatin modification-related protein MEAF6, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4273.03Show/hide
Query:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-
        G SDWDDGRWEW++TPRRDGRS+SSRHHQPS SPMYVGASP+AR  S W  G     +TP   G     SSASPWD ISPSPVPVRASGSS KSS+SSY 
Subjt:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-

Query:  SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA
        SKSHHL FSSRSS SSED+    QAD+S++NGTKYEISENMR EMEYNSD A
Subjt:  SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA

KAG7014582.1 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-4273.03Show/hide
Query:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-
        G SDWDDGRWEW++TPRRDGRS+SSRHHQPS SPMYVGASP+AR  S W  G     +TP   G     SSASPWD ISPSPVPVRASGSS KSS+SSY 
Subjt:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-

Query:  SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA
        SKSHHL FSSRSS SSED+    QAD+S++NGTKYEISENMR EMEYNSD A
Subjt:  SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA

XP_008451253.1 PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Cucumis melo]3.1e-4368.52Show/hide
Query:  GLSDWDDGRWEW----------KDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGS
        G SDWDDGRWEW          ++TPRRDGRSNSSRHHQPSPSPMYVGASP+AR  S W  G     +TP   G     SSASPWD ISPSPVPVRASGS
Subjt:  GLSDWDDGRWEW----------KDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGS

Query:  STKSSNSSY-SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA
        S +SS++SY SK+HH+KFSSRSS  +ED + DSQAD+S+LNG+KYEISENMRLEMEYNSD A
Subjt:  STKSSNSSY-SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA

XP_022143541.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Momordica charantia]4.3e-4575.66Show/hide
Query:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-
        G SDWDDGRWEW+DTPRRDGRSNSSRHHQPS SPMYVGASP+AR  S W  G     +TP      NS SSASPWD ISPSPVPVRASGSSTKSS+SSY 
Subjt:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-

Query:  SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA
        +KSHHLKFSSRSSH SE    DSQ D+S+  GTKYEISENMRLEMEYNSD A
Subjt:  SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA

XP_038897203.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Benincasa hispida]2.8e-4473.03Show/hide
Query:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSYS
        G SDWDDGRWEW++TPRRDGRSNSSRHHQPSPSPMYVGASP+AR  S W  G     +TP   G      SASPWD ISPSPVPVRASGSS KSS+SSY 
Subjt:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSYS

Query:  -KSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA
         K+HHLKFSSR S  SED + DS  D+S+LNGTKYEISENMRLEMEYNSD A
Subjt:  -KSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA

TrEMBL top hitse value%identityAlignment
A0A0A0K5G4 Uncharacterized protein1.6e-4267.9Show/hide
Query:  GLSDWDDGRWEW----------KDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGS
        G SDWDDGRWEW          ++TPRRDGRSNSSRH+QPSPSPMYVGASP+AR  S W  G     +TP   G     SSASPWD ISPSPVPVRASGS
Subjt:  GLSDWDDGRWEW----------KDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGS

Query:  STKSSNSSY-SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA
        S +SS++SY SK+HHLKFSSRSS  +ED + DSQAD+S+LNG+K+EISENMRLEMEYNSD A
Subjt:  STKSSNSSY-SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA

A0A1S3BS44 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH71.5e-4368.52Show/hide
Query:  GLSDWDDGRWEW----------KDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGS
        G SDWDDGRWEW          ++TPRRDGRSNSSRHHQPSPSPMYVGASP+AR  S W  G     +TP   G     SSASPWD ISPSPVPVRASGS
Subjt:  GLSDWDDGRWEW----------KDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGS

Query:  STKSSNSSY-SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA
        S +SS++SY SK+HH+KFSSRSS  +ED + DSQAD+S+LNG+KYEISENMRLEMEYNSD A
Subjt:  STKSSNSSY-SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA

A0A5D3CA03 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH71.5e-4368.52Show/hide
Query:  GLSDWDDGRWEW----------KDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGS
        G SDWDDGRWEW          ++TPRRDGRSNSSRHHQPSPSPMYVGASP+AR  S W  G     +TP   G     SSASPWD ISPSPVPVRASGS
Subjt:  GLSDWDDGRWEW----------KDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGS

Query:  STKSSNSSY-SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA
        S +SS++SY SK+HH+KFSSRSS  +ED + DSQAD+S+LNG+KYEISENMRLEMEYNSD A
Subjt:  STKSSNSSY-SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA

A0A6J1CQK3 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH72.1e-4575.66Show/hide
Query:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-
        G SDWDDGRWEW+DTPRRDGRSNSSRHHQPS SPMYVGASP+AR  S W  G     +TP      NS SSASPWD ISPSPVPVRASGSSTKSS+SSY 
Subjt:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-

Query:  SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA
        +KSHHLKFSSRSSH SE    DSQ D+S+  GTKYEISENMRLEMEYNSD A
Subjt:  SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA

A0A6J1GNB0 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH71.1e-4171.71Show/hide
Query:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-
        G SDWDDGRWEW++TPRRDGRS+SSRHHQPS SPMYVGASP+AR  S W  G     +TP   G     SSASPWD ISPSPVPVRASGSS KSS+SSY 
Subjt:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNAR--SDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-

Query:  SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA
        SKSH+L FSSRSS SSED+    Q D+S++NGTKYEISENMR EMEYNSD A
Subjt:  SKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLEMEYNSDHA

SwissProt top hitse value%identityAlignment
F4K2E9 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH79.0e-2247.06Show/hide
Query:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNARSDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-SK
        G SDWDDG+ EW+ +P  D  S+ SR  QPSPSPM   ASP+AR         W DTPR     ++ SSASPWD  +PSP+P+RASGSS +SS+S Y  +
Subjt:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNARSDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-SK

Query:  SHHLKFSSRSSHSSEDFEHDSQADESKLNGT---KYEISENMRLEMEYNSDHA
        S+ L +S        D  ++  +DE +  G    K+EI+E MR+EMEY SD A
Subjt:  SHHLKFSSRSSHSSEDFEHDSQADESKLNGT---KYEISENMRLEMEYNSDHA

Arabidopsis top hitse value%identityAlignment
AT5G13010.1 RNA helicase family protein6.4e-2347.06Show/hide
Query:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNARSDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-SK
        G SDWDDG+ EW+ +P  D  S+ SR  QPSPSPM   ASP+AR         W DTPR     ++ SSASPWD  +PSP+P+RASGSS +SS+S Y  +
Subjt:  GLSDWDDGRWEWKDTPRRDGRSNSSRHHQPSPSPMYVGASPNARSDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSY-SK

Query:  SHHLKFSSRSSHSSEDFEHDSQADESKLNGT---KYEISENMRLEMEYNSDHA
        S+ L +S        D  ++  +DE +  G    K+EI+E MR+EMEY SD A
Subjt:  SHHLKFSSRSSHSSEDFEHDSQADESKLNGT---KYEISENMRLEMEYNSDHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCCTACGTGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACATAGTGTCACCAGGATAAGGAGGGAGTCTGAGGACTCGGATCATTT
GCTTTGGAGTAGTGAGTTTGCTAGAGTTGCTTTTTTGAGGAGTTTGACTTCAATCTTGTCAGGCTTCAACATTTTAGGAGCTTCTTCTCCATCCACCTTTTTGCGAGAAA
GGGCGGTTTTTTTGGCGGGTTTATCTGATTGGGATGATGGTAGATGGGAATGGAAAGATACACCACGTAGGGATGGCCGCTCTAATTCTAGTAGGCACCATCAACCTTCA
CCATCCCCAATGTATGTTGGTGCCTCACCTAATGCTCGATCTGATTGGGATGATGGTAGATGGGAATGGAAAGATACACCACGTAGGGATGGCCGCTCTAATTCTAGTTC
TTCTGCTTCACCTTGGGATCCGATCTCTCCTTCTCCAGTTCCAGTACGGGCCTCTGGATCCTCAACAAAGTCATCAAATTCAAGTTATTCTAAATCCCACCATCTTAAAT
TTTCATCGCGAAGTTCACATTCTTCGGAGGATTTTGAACATGATTCTCAAGCCGATGAGTCTAAGTTAAATGGAACAAAGTATGAGATCAGTGAGAACATGCGCCTGGAG
ATGGAATATAACTCTGATCATGCTTGTAACTCTCTCCTCTCTTCTTCCATGCGACTCCTTGACTTTTCTGACCACCGTCGGCCGCGAAAGTACTGGATCTGTCCCATCAC
ACCAAATGTGACTGCAAATTCGCTAGGGCTTGTTCAATCTTCGAAAGGTGGTGAAGAAGCTCCTTTGCCGGCGAAGAGTATGTCACAAGCCAACGTGATCTCAAAACCAG
CGGTGATGGCGAAACCGGCAATCGCTCGAGGTTCGGATTCCGACAACGTTCCATTCGCACAACGAGATCGGATTCAACATCTTCACATCTCCCTTGAAGACATCCTCCGC
CGCAGTAAGGTTTACACTAGAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCCTACGTGGATGCTTTGGATCATTGCATCTGTATCGAATACAAGGTGGGTCGTATCACATAGTGTCACCAGGATAAGGAGGGAGTCTGAGGACTCGGATCATTT
GCTTTGGAGTAGTGAGTTTGCTAGAGTTGCTTTTTTGAGGAGTTTGACTTCAATCTTGTCAGGCTTCAACATTTTAGGAGCTTCTTCTCCATCCACCTTTTTGCGAGAAA
GGGCGGTTTTTTTGGCGGGTTTATCTGATTGGGATGATGGTAGATGGGAATGGAAAGATACACCACGTAGGGATGGCCGCTCTAATTCTAGTAGGCACCATCAACCTTCA
CCATCCCCAATGTATGTTGGTGCCTCACCTAATGCTCGATCTGATTGGGATGATGGTAGATGGGAATGGAAAGATACACCACGTAGGGATGGCCGCTCTAATTCTAGTTC
TTCTGCTTCACCTTGGGATCCGATCTCTCCTTCTCCAGTTCCAGTACGGGCCTCTGGATCCTCAACAAAGTCATCAAATTCAAGTTATTCTAAATCCCACCATCTTAAAT
TTTCATCGCGAAGTTCACATTCTTCGGAGGATTTTGAACATGATTCTCAAGCCGATGAGTCTAAGTTAAATGGAACAAAGTATGAGATCAGTGAGAACATGCGCCTGGAG
ATGGAATATAACTCTGATCATGCTTGTAACTCTCTCCTCTCTTCTTCCATGCGACTCCTTGACTTTTCTGACCACCGTCGGCCGCGAAAGTACTGGATCTGTCCCATCAC
ACCAAATGTGACTGCAAATTCGCTAGGGCTTGTTCAATCTTCGAAAGGTGGTGAAGAAGCTCCTTTGCCGGCGAAGAGTATGTCACAAGCCAACGTGATCTCAAAACCAG
CGGTGATGGCGAAACCGGCAATCGCTCGAGGTTCGGATTCCGACAACGTTCCATTCGCACAACGAGATCGGATTCAACATCTTCACATCTCCCTTGAAGACATCCTCCGC
CGCAGTAAGGTTTACACTAGAACATAA
Protein sequenceShow/hide protein sequence
MSPTWMLWIIASVSNTRWVVSHSVTRIRRESEDSDHLLWSSEFARVAFLRSLTSILSGFNILGASSPSTFLRERAVFLAGLSDWDDGRWEWKDTPRRDGRSNSSRHHQPS
PSPMYVGASPNARSDWDDGRWEWKDTPRRDGRSNSSSSASPWDPISPSPVPVRASGSSTKSSNSSYSKSHHLKFSSRSSHSSEDFEHDSQADESKLNGTKYEISENMRLE
MEYNSDHACNSLLSSSMRLLDFSDHRRPRKYWICPITPNVTANSLGLVQSSKGGEEAPLPAKSMSQANVISKPAVMAKPAIARGSDSDNVPFAQRDRIQHLHISLEDILR
RSKVYTRT