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Spg035035 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035035
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:27932923..27941412
RNA-Seq ExpressionSpg035035
SyntenySpg035035
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.5e-1943.68Show/hide
Query:  ESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFNV---SV---------------------
        E  R  S+ +L    +S    VF +    +PRG+R +L TG+LDKTVEIELPVPDTLPTSAES +S+SSTW  +   SV                     
Subjt:  ESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFNV---SV---------------------

Query:  GSTGIVRGDDICWLHAVLRAKLAGGPGGIL-----QREREELSELGMLITDAQSELSVLWPTRFSFTHREGNQV
        GS GIVRGDD+CWLHAV  AK AG PGG +      R R +  +     T  QSE       R S T R  N+V
Subjt:  GSTGIVRGDDICWLHAVLRAKLAGGPGGIL-----QREREELSELGMLITDAQSELSVLWPTRFSFTHREGNQV

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.3e-2250.75Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSS
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAES  S+ +TWLELY ESV   +F                                          S   
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSS

Query:  TWFNVSVGSTGIVRGDDICWLHAVLRAKLAGGPG
          FNVSVGSTGIVRGDD+CWLHAV R K A  PG
Subjt:  TWFNVSVGSTGIVRGDDICWLHAVLRAKLAGGPG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]9.6e-2246.1Show/hide
Query:  STWLEL---YIESVSCRVFENEEFDVPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSSTWFNVSV-----------
        + WL +   +++ +  R+   E  ++PRG+RSSLQTGELDKT                 VEIELPVPDTLPTSAESF S+SSTW  +             
Subjt:  STWLEL---YIESVSCRVFENEEFDVPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSSTWFNVSV-----------

Query:  -------------GSTGIVRGDDICWLHAVLRAKLAGGPGG
                     GS GIVRGDD+CWLH V RAK+AGGPGG
Subjt:  -------------GSTGIVRGDDICWLHAVLRAKLAGGPGG

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-1942.22Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELP
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE F S+SSTWLELY+ESV   +   +  DV                      
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELP

Query:  VPDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDICWLHAVLRAKLAGGP-GGILQREREELSELGMLITDAQSELSVLW
                    R++S   +    GS GIVRGDD+CWLHAV RAK AGGP GG+          +G+   D  SE    W
Subjt:  VPDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDICWLHAVLRAKLAGGP-GGILQREREELSELGMLITDAQSELSVLW

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.0e-2055.17Show/hide
Query:  PRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFRSSSSTW---------------------------FNVSVGSTGIVRGDDIC
        PRG+R SLQTGELDKTV                IELPVPDTLPTSAES  S+SSTW                           FNVSVGSTGIVRGDD+C
Subjt:  PRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFRSSSSTW---------------------------FNVSVGSTGIVRGDDIC

Query:  WLHAVLRAKLAGGPGG
        WLHAV RAK  GGPGG
Subjt:  WLHAVLRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein7.4e-2043.68Show/hide
Query:  ESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFNV---SV---------------------
        E  R  S+ +L    +S    VF +    +PRG+R +L TG+LDKTVEIELPVPDTLPTSAES +S+SSTW  +   SV                     
Subjt:  ESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFNV---SV---------------------

Query:  GSTGIVRGDDICWLHAVLRAKLAGGPGGIL-----QREREELSELGMLITDAQSELSVLWPTRFSFTHREGNQV
        GS GIVRGDD+CWLHAV  AK AG PGG +      R R +  +     T  QSE       R S T R  N+V
Subjt:  GSTGIVRGDDICWLHAVLRAKLAGGPGGIL-----QREREELSELGMLITDAQSELSVLWPTRFSFTHREGNQV

A0A5A7V638 Uncharacterized protein1.6e-2250.75Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSS
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAES  S+ +TWLELY ESV   +F                                          S   
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSS

Query:  TWFNVSVGSTGIVRGDDICWLHAVLRAKLAGGPG
          FNVSVGSTGIVRGDD+CWLHAV R K A  PG
Subjt:  TWFNVSVGSTGIVRGDDICWLHAVLRAKLAGGPG

A0A5A7VIY9 Uncharacterized protein4.7e-2246.1Show/hide
Query:  STWLEL---YIESVSCRVFENEEFDVPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSSTWFNVSV-----------
        + WL +   +++ +  R+   E  ++PRG+RSSLQTGELDKT                 VEIELPVPDTLPTSAESF S+SSTW  +             
Subjt:  STWLEL---YIESVSCRVFENEEFDVPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSSTWFNVSV-----------

Query:  -------------GSTGIVRGDDICWLHAVLRAKLAGGPGG
                     GS GIVRGDD+CWLH V RAK+AGGPGG
Subjt:  -------------GSTGIVRGDDICWLHAVLRAKLAGGPGG

A0A5D3CCC7 DNA/RNA polymerases superfamily protein9.7e-2042.22Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELP
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE F S+SSTWLELY+ESV   +   +  DV                      
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELP

Query:  VPDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDICWLHAVLRAKLAGGP-GGILQREREELSELGMLITDAQSELSVLW
                    R++S   +    GS GIVRGDD+CWLHAV RAK AGGP GG+          +G+   D  SE    W
Subjt:  VPDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDICWLHAVLRAKLAGGP-GGILQREREELSELGMLITDAQSELSVLW

A0A5D3CJX3 CCHC-type domain-containing protein2.0e-2055.17Show/hide
Query:  PRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFRSSSSTW---------------------------FNVSVGSTGIVRGDDIC
        PRG+R SLQTGELDKTV                IELPVPDTLPTSAES  S+SSTW                           FNVSVGSTGIVRGDD+C
Subjt:  PRGSRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFRSSSSTW---------------------------FNVSVGSTGIVRGDDIC

Query:  WLHAVLRAKLAGGPGG
        WLHAV RAK  GGPGG
Subjt:  WLHAVLRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAGTAGGTCGAGTCTACAAACTGGGGAAC
TAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACA
GGGATCGTTAGAGGTGACGATATCTGTTGGCTTCACGCCGTCCTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGATTCTCCAGCGAGAAAGAGAAGAGTTATCAGAATT
GGGCATGTTGATCACTGATGCTCAGAGTGAACTTTCGGTTTTGTGGCCGACGCGCTTCAGCTTCACTCATCGAGAAGGAAATCAAGTGGCTCATCTCCTGGCTAGCTTTG
CTTTAGTTGATCAGCAGGATAAAGTGGATGGAGTCTTTTCTGTCATGTGGATGGCTTTATTTATGCTAATGTTGCTTCTATGTAATGTTTCGATATTTATTTGGATGCTA
TGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAGTAGGTCGAGTCTACAAACTGGGGAAC
TAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGGGTCAACA
GGGATCGTTAGAGGTGACGATATCTGTTGGCTTCACGCCGTCCTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGATTCTCCAGCGAGAAAGAGAAGAGTTATCAGAATT
GGGCATGTTGATCACTGATGCTCAGAGTGAACTTTCGGTTTTGTGGCCGACGCGCTTCAGCTTCACTCATCGAGAAGGAAATCAAGTGGCTCATCTCCTGGCTAGCTTTG
CTTTAGTTGATCAGCAGGATAAAGTGGATGGAGTCTTTTCTGTCATGTGGATGGCTTTATTTATGCTAATGTTGCTTCTATGTAATGTTTCGATATTTATTTGGATGCTA
TGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESFRSSSSTWLELYIESVSCRVFENEEFDVPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWFNVSVGST
GIVRGDDICWLHAVLRAKLAGGPGGILQREREELSELGMLITDAQSELSVLWPTRFSFTHREGNQVAHLLASFALVDQQDKVDGVFSVMWMALFMLMLLLCNVSIFIWML