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Spg035077 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035077
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold12:32124078..32126571
RNA-Seq ExpressionSpg035077
SyntenySpg035077
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.4e-3261.64Show/hide
Query:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS------LEEDDVYWLHAIFRAKLAGGPGG-------
        PRGNR SLQTGEL KT   +          L TL+VL DNDA+VEIELPV DTLP   E    +      + EDDV WLH +FR K AGGPGG       
Subjt:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS------LEEDDVYWLHAIFRAKLAGGPGG-------

Query:  GVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR
        GVMPPR+SRRR+QN+D TQ+PTQ QSERGSSTPRGQNEA SERFAR
Subjt:  GVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-3863.23Show/hide
Query:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS----------------------LEEDDVYWLHAIFR
        PRGNR SLQTGEL KT              LSTLSVLRDND VVEIELP+PDTLPT  E  + +                      +  DDV WLHA+FR
Subjt:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS----------------------LEEDDVYWLHAIFR

Query:  AKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR
        AK  GGPGGGVMPPRTSRRR+QNQDGTQ+PTQ QSERGSSTPRGQNEAGSERFAR
Subjt:  AKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-3456Show/hide
Query:  RPRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPT-----------------------------------------VQ
        RPRGNR+SLQTGEL KT              LSTLSVLRDNDAVVEIELPVPDTLPT                                         V 
Subjt:  RPRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPT-----------------------------------------VQ

Query:  EGQQVSLEEDDVYWLHAIFRAKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR
         G    +  D+V WLHA+F AK AGGPGGGVMPPRTSRRR+QNQD  Q+PTQ QSERGSSTPRGQNEAGSERF R
Subjt:  EGQQVSLEEDDVYWLHAIFRAKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]3.1e-3267.19Show/hide
Query:  LSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQ-------------------VSLEE------DDVYWLHAIFRAKLAGGPGGGVMPPRTSRRRKQNQDGT
        LSTLSVLRDNDAVVEIELPVPDTLPT  E  +                   +S+E       DDV WLHA+FRAK  GGP GGVMPPRTSRR KQNQD T
Subjt:  LSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQ-------------------VSLEE------DDVYWLHAIFRAKLAGGPGGGVMPPRTSRRRKQNQDGT

Query:  QNPTQSQSERGSSTPRGQNEAGSERFAR
        Q+PTQ QSERGSSTPRGQNEAGSERFAR
Subjt:  QNPTQSQSERGSSTPRGQNEAGSERFAR

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-3863.23Show/hide
Query:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS----------------------LEEDDVYWLHAIFR
        PRGNR SLQTGEL KT              LSTLSVLRDND VVEIELP+PDTLPT  E  + +                      +  DDV WLHA+FR
Subjt:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS----------------------LEEDDVYWLHAIFR

Query:  AKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR
        AK  GGPGGGVMPPRTSRRR+QNQDGTQ+PTQ QSERGSSTPRGQNEAGSERFAR
Subjt:  AKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase6.3e-3963.23Show/hide
Query:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS----------------------LEEDDVYWLHAIFR
        PRGNR SLQTGEL KT              LSTLSVLRDND VVEIELP+PDTLPT  E  + +                      +  DDV WLHA+FR
Subjt:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS----------------------LEEDDVYWLHAIFR

Query:  AKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR
        AK  GGPGGGVMPPRTSRRR+QNQDGTQ+PTQ QSERGSSTPRGQNEAGSERFAR
Subjt:  AKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR

A0A5A7U9X4 DNA/RNA polymerases superfamily protein5.5e-3556Show/hide
Query:  RPRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPT-----------------------------------------VQ
        RPRGNR+SLQTGEL KT              LSTLSVLRDNDAVVEIELPVPDTLPT                                         V 
Subjt:  RPRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPT-----------------------------------------VQ

Query:  EGQQVSLEEDDVYWLHAIFRAKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR
         G    +  D+V WLHA+F AK AGGPGGGVMPPRTSRRR+QNQD  Q+PTQ QSERGSSTPRGQNEAGSERF R
Subjt:  EGQQVSLEEDDVYWLHAIFRAKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.5e-3267.19Show/hide
Query:  LSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQ-------------------VSLEE------DDVYWLHAIFRAKLAGGPGGGVMPPRTSRRRKQNQDGT
        LSTLSVLRDNDAVVEIELPVPDTLPT  E  +                   +S+E       DDV WLHA+FRAK  GGP GGVMPPRTSRR KQNQD T
Subjt:  LSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQ-------------------VSLEE------DDVYWLHAIFRAKLAGGPGGGVMPPRTSRRRKQNQDGT

Query:  QNPTQSQSERGSSTPRGQNEAGSERFAR
        Q+PTQ QSERGSSTPRGQNEAGSERFAR
Subjt:  QNPTQSQSERGSSTPRGQNEAGSERFAR

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.2e-3261.64Show/hide
Query:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS------LEEDDVYWLHAIFRAKLAGGPGG-------
        PRGNR SLQTGEL KT   +          L TL+VL DNDA+VEIELPV DTLP   E    +      + EDDV WLH +FR K AGGPGG       
Subjt:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS------LEEDDVYWLHAIFRAKLAGGPGG-------

Query:  GVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR
        GVMPPR+SRRR+QN+D TQ+PTQ QSERGSSTPRGQNEA SERFAR
Subjt:  GVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR

A0A5D3D150 Reverse transcriptase6.3e-3963.23Show/hide
Query:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS----------------------LEEDDVYWLHAIFR
        PRGNR SLQTGEL KT              LSTLSVLRDND VVEIELP+PDTLPT  E  + +                      +  DDV WLHA+FR
Subjt:  PRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTVQEGQQVS----------------------LEEDDVYWLHAIFR

Query:  AKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR
        AK  GGPGGGVMPPRTSRRR+QNQDGTQ+PTQ QSERGSSTPRGQNEAGSERFAR
Subjt:  AKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGACAGCAAGACACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCATCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGA
AGATGAAGAAGAATTTCGTGGTTTTGAGGGCAATTCTGCCATTGGATGGGAATCTCGTTTTCATGTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAAC
TAGCTAAGACTCCCGAGGCTATACGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCG
GTGCCTGATACACTGCCAACCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCTATTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGG
AGGGGGAGTAATGCCACCACGTACCAGCAGACGACGCAAGCAGAATCAGGACGGGACGCAGAATCCTACCCAAAGTCAATCTGAAAGGGGATCCAGTACCCCGAGAGGTC
AGAATGAGGCAGGGAGTGAGCGATTTGCTAGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGACAGCAAGACACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTTCCATCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGA
AGATGAAGAAGAATTTCGTGGTTTTGAGGGCAATTCTGCCATTGGATGGGAATCTCGTTTTCATGTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAAC
TAGCTAAGACTCCCGAGGCTATACGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCG
GTGCCTGATACACTGCCAACCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCTATTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGG
AGGGGGAGTAATGCCACCACGTACCAGCAGACGACGCAAGCAGAATCAGGACGGGACGCAGAATCCTACCCAAAGTCAATCTGAAAGGGGATCCAGTACCCCGAGAGGTC
AGAATGAGGCAGGGAGTGAGCGATTTGCTAGA
Protein sequenceShow/hide protein sequence
MEMDSKTPTTASPIISPISHLFPSKLSEHFKERVKEEDEEEFRGFEGNSAIGWESRFHVFRPRGNRSSLQTGELAKTPEAIRYRVHTGYIPLSTLSVLRDNDAVVEIELP
VPDTLPTVQEGQQVSLEEDDVYWLHAIFRAKLAGGPGGGVMPPRTSRRRKQNQDGTQNPTQSQSERGSSTPRGQNEAGSERFAR