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Spg035083 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035083
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:19078998..19081428
RNA-Seq ExpressionSpg035083
SyntenySpg035083
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037787.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.6e-0658.06Show/hide
Query:  VYKLNPKLYLVEIELPEPDTLPTSAESSRSSSSSTFQEGQRVSLEKDDVRWLHAIFRTKLAG
        V+KLN KLYLVEIELP  DTLPTSAESS S+S S         +  DDV WL  +FR K  G
Subjt:  VYKLNPKLYLVEIELPEPDTLPTSAESSRSSSSSTFQEGQRVSLEKDDVRWLHAIFRTKLAG

KAA0042466.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-0459.26Show/hide
Query:  YLVEIELPEPDTLPTSAESSRSSSSSTFQEGQRVSLEKDDVRWLHAIFRTKLAG
        +LV IELP PDTLPTSAESSRS+S S         +  DDV WLHA+FR K  G
Subjt:  YLVEIELPEPDTLPTSAESSRSSSSSTFQEGQRVSLEKDDVRWLHAIFRTKLAG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.4e-0736.13Show/hide
Query:  IGKAQAKPAIAESVFNLSTPGFVFGLSYIEGTKRIFVQTRRISGVLWCFE--------------HSGVYKLNPKLYLVEIELPEPDTLPTSAESSRSSSS
        I K  AKPAIAES  N      +FGLSY+E  +    +    SG    F               H+G  KL+     VEIELP PDTLPTSAESS+S+SS
Subjt:  IGKAQAKPAIAESVFNLSTPGFVFGLSYIEGTKRIFVQTRRISGVLWCFE--------------HSGVYKLNPKLYLVEIELPEPDTLPTSAESSRSSSS

Query:  STFQ--------------------------EGQRVSLEKDDVRWLHAIFRTKLAG
        +  +                          EG    +  DD+ WLHA+F  K AG
Subjt:  STFQ--------------------------EGQRVSLEKDDVRWLHAIFRTKLAG

TYJ96574.1 uncharacterized protein E5676_scaffold791G00040 [Cucumis melo var. makuwa]9.3e-0764.71Show/hide
Query:  KAQAKPAIAESVFNLSTPGFVFGLSYIEGTKRIFVQTRRISGVLWCFEHSG
        K  AKP IAES  N      +F LSY+EGTKRIF QTRRISGVL  FE+SG
Subjt:  KAQAKPAIAESVFNLSTPGFVFGLSYIEGTKRIFVQTRRISGVLWCFEHSG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-0453.97Show/hide
Query:  LVEIELPEPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EKDDVRWLHAIFRTKLAG
        +VEIELP PDTLPTSAESS S+SS+    + E   V +        +DDV WLHA+FR K AG
Subjt:  LVEIELPEPDTLPTSAESSRSSSSS---TFQEGQRVSL-------EKDDVRWLHAIFRTKLAG

TrEMBL top hitse value%identityAlignment
A0A5A7TKJ1 Retrotransposon protein5.5e-0559.26Show/hide
Query:  YLVEIELPEPDTLPTSAESSRSSSSSTFQEGQRVSLEKDDVRWLHAIFRTKLAG
        +LV IELP PDTLPTSAESSRS+S S         +  DDV WLHA+FR K  G
Subjt:  YLVEIELPEPDTLPTSAESSRSSSSSTFQEGQRVSLEKDDVRWLHAIFRTKLAG

A0A5A7UAH6 CCHC-type domain-containing protein1.2e-0736.13Show/hide
Query:  IGKAQAKPAIAESVFNLSTPGFVFGLSYIEGTKRIFVQTRRISGVLWCFE--------------HSGVYKLNPKLYLVEIELPEPDTLPTSAESSRSSSS
        I K  AKPAIAES  N      +FGLSY+E  +    +    SG    F               H+G  KL+     VEIELP PDTLPTSAESS+S+SS
Subjt:  IGKAQAKPAIAESVFNLSTPGFVFGLSYIEGTKRIFVQTRRISGVLWCFE--------------HSGVYKLNPKLYLVEIELPEPDTLPTSAESSRSSSS

Query:  STFQ--------------------------EGQRVSLEKDDVRWLHAIFRTKLAG
        +  +                          EG    +  DD+ WLHA+F  K AG
Subjt:  STFQ--------------------------EGQRVSLEKDDVRWLHAIFRTKLAG

A0A5D3BAD1 Retrotrans_gag domain-containing protein7.2e-0560.38Show/hide
Query:  LVEIELPEPDTLPTSAESSRSSSSSTFQEGQRVSLEKDDVRWLHAIFRTKLAG
        +VEIELP PDTLPTSAES  S+S ST        +  DDV WLHA+FR K AG
Subjt:  LVEIELPEPDTLPTSAESSRSSSSSTFQEGQRVSLEKDDVRWLHAIFRTKLAG

A0A5D3BC77 CCHC-type domain-containing protein4.5e-0764.71Show/hide
Query:  KAQAKPAIAESVFNLSTPGFVFGLSYIEGTKRIFVQTRRISGVLWCFEHSG
        K  AKP IAES  N      +F LSY+EGTKRIF QTRRISGVL  FE+SG
Subjt:  KAQAKPAIAESVFNLSTPGFVFGLSYIEGTKRIFVQTRRISGVLWCFEHSG

A0A5D3DVK1 Ty3-gypsy retrotransposon protein2.2e-0658.06Show/hide
Query:  VYKLNPKLYLVEIELPEPDTLPTSAESSRSSSSSTFQEGQRVSLEKDDVRWLHAIFRTKLAG
        V+KLN KLYLVEIELP  DTLPTSAESS S+S S         +  DDV WL  +FR K  G
Subjt:  VYKLNPKLYLVEIELPEPDTLPTSAESSRSSSSSTFQEGQRVSLEKDDVRWLHAIFRTKLAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAAAACTTTGCTCCGTTTCAGTTTTGGAGAGTTTGGAACACAAAGTTCGGTCCAATGCGAGATAGGAAAAGCTCAAGCAAAACCAGCCATTGCAGAATCTGTGTT
CAACCTGTCAACCCCTGGTTTTGTATTCGGTTTGAGCTACATAGAAGGAACTAAGAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATT
CTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGAGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACG
TTTCAGGAGGGTCAACGGGTATCGTTAGAGAAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGT
mRNA sequenceShow/hide mRNA sequence
ATGGTCAAAACTTTGCTCCGTTTCAGTTTTGGAGAGTTTGGAACACAAAGTTCGGTCCAATGCGAGATAGGAAAAGCTCAAGCAAAACCAGCCATTGCAGAATCTGTGTT
CAACCTGTCAACCCCTGGTTTTGTATTCGGTTTGAGCTACATAGAAGGAACTAAGAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATT
CTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTAGAGATCGAGCTCCCGGAGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCTACG
TTTCAGGAGGGTCAACGGGTATCGTTAGAGAAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGT
Protein sequenceShow/hide protein sequence
MVKTLLRFSFGEFGTQSSVQCEIGKAQAKPAIAESVFNLSTPGFVFGLSYIEGTKRIFVQTRRISGVLWCFEHSGVYKLNPKLYLVEIELPEPDTLPTSAESSRSSSSST
FQEGQRVSLEKDDVRWLHAIFRTKLAG