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Spg035098 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035098
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:17053185..17055167
RNA-Seq ExpressionSpg035098
SyntenySpg035098
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004518 - nuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]7.2e-1047.47Show/hide
Query:  FSLSYTEGTKRARDFRAKQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI
        F LSY EGTKR +  R   +              +++   +F    L TLSVLRDND V     VEIEL VPDTLPTSAES RS+S+TW+ELY E +++
Subjt:  FSLSYTEGTKRARDFRAKQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI

KAA0057197.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-0968.52Show/hide
Query:  PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI
        PL TLSVLRDND +     VEIELLVPDTLPTSAESS S+S+TW+ELY E +++
Subjt:  PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0959.15Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI
        ++ S  L+G +      PL TLSVLRDND V     VEIEL VPDTLPTSAESS S+SSTW+ELY+E V++
Subjt:  QVESEALFGYI------PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI

TYK18765.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-0968.52Show/hide
Query:  PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI
        PL TLSVLRDND +     VEIELLVPDTLPTSAESS S+S+TW+ELY E +++
Subjt:  PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.1e-0959.15Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI
        ++ S  L+G +      PL TLSVLRDND V     VEIEL VPDTLPTSAESS S+SSTW+ELY+E V++
Subjt:  QVESEALFGYI------PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI

TrEMBL top hitse value%identityAlignment
A0A5A7URC7 Gag/pol protein7.8e-1068.52Show/hide
Query:  PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI
        PL TLSVLRDND +     VEIELLVPDTLPTSAESS S+S+TW+ELY E +++
Subjt:  PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI

A0A5A7VMG9 Reverse transcriptase1.0e-0959.15Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI
        ++ S  L+G +      PL TLSVLRDND V     VEIEL VPDTLPTSAESS S+SSTW+ELY+E V++
Subjt:  QVESEALFGYI------PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI

A0A5D3D5E2 Gag/pol protein7.8e-1068.52Show/hide
Query:  PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI
        PL TLSVLRDND +     VEIELLVPDTLPTSAESS S+S+TW+ELY E +++
Subjt:  PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI

A0A5D3DIM8 Uncharacterized protein3.5e-1047.47Show/hide
Query:  FSLSYTEGTKRARDFRAKQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI
        F LSY EGTKR +  R   +              +++   +F    L TLSVLRDND V     VEIEL VPDTLPTSAES RS+S+TW+ELY E +++
Subjt:  FSLSYTEGTKRARDFRAKQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI

A0A5D3DX39 Reverse transcriptase1.0e-0959.15Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI
        ++ S  L+G +      PL TLSVLRDND V     VEIEL VPDTLPTSAESS S+SSTW+ELY+E V++
Subjt:  QVESEALFGYI------PLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACCTCTGGTTTTGGATTCAGTTTGAGCTACACAGAAGGAACTAAGAGAGCACGGGATTTTCGAGCAAAGCAGGAAGATCTCTGGTTTTCTCTGGTTTTTCGAGC
ATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATACTGTCGTGAGTGCTTGGCAGGTAGAGA
TCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGCCTGTCTATATTGTAAATGTTTTG
TAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAACCTCTGGTTTTGGATTCAGTTTGAGCTACACAGAAGGAACTAAGAGAGCACGGGATTTTCGAGCAAAGCAGGAAGATCTCTGGTTTTCTCTGGTTTTTCGAGC
ATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATACTGTCGTGAGTGCTTGGCAGGTAGAGA
TCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGCCTGTCTATATTGTAAATGTTTTG
TAA
Protein sequenceShow/hide protein sequence
MPTSGFGFSLSYTEGTKRARDFRAKQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDTVVSAWQVEIELLVPDTLPTSAESSRSSSSTWVELYIEPVYIVNVL