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Spg035106 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035106
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:19206017..19208023
RNA-Seq ExpressionSpg035106
SyntenySpg035106
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.3e-1946.25Show/hide
Query:  EIHRRNQEVSCRVFENEEFDVYCINFGSV----------LRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLH
        E+H+ NQ++       E   +YC+  G              +LWVLEVR         P      + T  I      PL TLSVL DNDAVVSAG+APL 
Subjt:  EIHRRNQEVSCRVFENEEFDVYCINFGSV----------LRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLH

Query:  RRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI
        +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLELY ESV +
Subjt:  RRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]3.0e-2048.99Show/hide
Query:  EIHRRNQE---VSCRVFENEEFDVYCINFGSVLRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLHRRTSKRW
        E+++ NQ+   VSC VFENEEF VY INFG VLRKLWVLEVR         P      + TG +      PL TLSVLRDNDAV                
Subjt:  EIHRRNQE---VSCRVFENEEFDVYCINFGSVLRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLHRRTSKRW

Query:  LYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI
                      VEIELP P+ LPTSAESSRS+SSTWLELY E V +
Subjt:  LYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]2.6e-2445.63Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFEIHRRNQEVSCRVFENEEFDVYCINF
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF +   I     E + R   N          
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFEIHRRNQEVSCRVFENEEFDVYCINF

Query:  GSVLRKLWVLEVRPEAIWYRV-HTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELY
                    RP     ++  T    L TLSVLRDNDAV+               L+   PT       VEIELP+PDTLPT AES  S+SSTWLELY
Subjt:  GSVLRKLWVLEVRPEAIWYRV-HTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELY

Query:  IESVQI
         ESV +
Subjt:  IESVQI

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]7.3e-1946.25Show/hide
Query:  EIHRRNQEVSCRVFENEEFDVYCINFGSV----------LRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLH
        E+H+ NQ++       E   +YC+  G              +LWVLEVR         P      + T  I      PL TLSVL DNDAVVSAG+APL 
Subjt:  EIHRRNQEVSCRVFENEEFDVYCINFGSV----------LRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLH

Query:  RRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI
        +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLELY ESV +
Subjt:  RRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]3.2e-3043.78Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVN--LWFFI------RFEIHR
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N  L++ I      ++++  
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVN--LWFFI------RFEIHR

Query:  RNQEVSCRVFENEEFDVYCINFGSVLRKLWVLEVRPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRT----SKRWLYWACPTQRRSVML----
        R    S +  + ++ ++       +L       V P+ I+        PL TLSVLRDNDAVVS G+    +         ++           +L    
Subjt:  RNQEVSCRVFENEEFDVYCINFGSVLRKLWVLEVRPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRT----SKRWLYWACPTQRRSVML----

Query:  --VEIELPVPDTLPTSAESSRSSSSTWLELYIE
          +EIEL VPDTLPTSAESS S+SSTWLE   E
Subjt:  --VEIELPVPDTLPTSAESSRSSSSTWLELYIE

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase3.6e-1946.25Show/hide
Query:  EIHRRNQEVSCRVFENEEFDVYCINFGSV----------LRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLH
        E+H+ NQ++       E   +YC+  G              +LWVLEVR         P      + T  I      PL TLSVL DNDAVVSAG+APL 
Subjt:  EIHRRNQEVSCRVFENEEFDVYCINFGSV----------LRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLH

Query:  RRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI
        +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLELY ESV +
Subjt:  RRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI

A0A5A7UFD2 Uncharacterized protein1.4e-2048.99Show/hide
Query:  EIHRRNQE---VSCRVFENEEFDVYCINFGSVLRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLHRRTSKRW
        E+++ NQ+   VSC VFENEEF VY INFG VLRKLWVLEVR         P      + TG +      PL TLSVLRDNDAV                
Subjt:  EIHRRNQE---VSCRVFENEEFDVYCINFGSVLRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLHRRTSKRW

Query:  LYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI
                      VEIELP P+ LPTSAESSRS+SSTWLELY E V +
Subjt:  LYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI

A0A5A7UGD0 Uncharacterized protein1.3e-2445.63Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFEIHRRNQEVSCRVFENEEFDVYCINF
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF +   I     E + R   N          
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFEIHRRNQEVSCRVFENEEFDVYCINF

Query:  GSVLRKLWVLEVRPEAIWYRV-HTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELY
                    RP     ++  T    L TLSVLRDNDAV+               L+   PT       VEIELP+PDTLPT AES  S+SSTWLELY
Subjt:  GSVLRKLWVLEVRPEAIWYRV-HTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELY

Query:  IESVQI
         ESV +
Subjt:  IESVQI

A0A5D3BTP3 Reverse transcriptase3.6e-1946.25Show/hide
Query:  EIHRRNQEVSCRVFENEEFDVYCINFGSV----------LRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLH
        E+H+ NQ++       E   +YC+  G              +LWVLEVR         P      + T  I      PL TLSVL DNDAVVSAG+APL 
Subjt:  EIHRRNQEVSCRVFENEEFDVYCINFGSV----------LRKLWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLRDNDAVVSAGRAPLH

Query:  RRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI
        +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLELY ESV +
Subjt:  RRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQI

A0A5D3CAC6 Uncharacterized protein1.5e-3043.78Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVN--LWFFI------RFEIHR
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N  L++ I      ++++  
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVN--LWFFI------RFEIHR

Query:  RNQEVSCRVFENEEFDVYCINFGSVLRKLWVLEVRPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRT----SKRWLYWACPTQRRSVML----
        R    S +  + ++ ++       +L       V P+ I+        PL TLSVLRDNDAVVS G+    +         ++           +L    
Subjt:  RNQEVSCRVFENEEFDVYCINFGSVLRKLWVLEVRPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRT----SKRWLYWACPTQRRSVML----

Query:  --VEIELPVPDTLPTSAESSRSSSSTWLELYIE
          +EIEL VPDTLPTSAESS S+SSTWLE   E
Subjt:  --VEIELPVPDTLPTSAESSRSSSSTWLELYIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGATACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTGCATTAATTTTGGTTCAGTATTGAGGAAGTTG
TGGGTGTTGGAAGTTAGGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGG
GCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACAC
TGCCAACGTCTGCTGAAAGTTCGAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCAGATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGATACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTGCATTAATTTTGGTTCAGTATTGAGGAAGTTG
TGGGTGTTGGAAGTTAGGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGG
GCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACAC
TGCCAACGTCTGCTGAAAGTTCGAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCAGATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFEIHRRNQEVSCRVFENEEFDVYCINFGSVLRKL
WVLEVRPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQIVNVL