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Spg035149 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035149
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:17125986..17127889
RNA-Seq ExpressionSpg035149
SyntenySpg035149
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-1667.5Show/hide
Query:  VGKLIQFPTIVMKNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES
        VGKLIQ+PT  MK  PRGNR S             L TLSVLRDNDAVVEIELPVPDTLPTS ES  S+SSTW+ELY ES
Subjt:  VGKLIQFPTIVMKNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-1373.44Show/hide
Query:  RGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES
        RGNRSS            PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY ES
Subjt:  RGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]3.3e-1667.5Show/hide
Query:  VGKLIQFPTIVMKNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES
        VGKLIQ+PT  MK  PRGNR S             L TLSVLRDNDAVVEIELPVPDTLPTS ES  S+SSTW+ELY ES
Subjt:  VGKLIQFPTIVMKNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.7e-1267.65Show/hide
Query:  KNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES
        K  PRGNR              PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ELY ES
Subjt:  KNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.5e-1373.44Show/hide
Query:  RGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES
        RGNRSS            PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY ES
Subjt:  RGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase1.6e-1667.5Show/hide
Query:  VGKLIQFPTIVMKNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES
        VGKLIQ+PT  MK  PRGNR S             L TLSVLRDNDAVVEIELPVPDTLPTS ES  S+SSTW+ELY ES
Subjt:  VGKLIQFPTIVMKNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES

A0A5A7T9P7 Gag/pol protein8.3e-1367.65Show/hide
Query:  KNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES
        K  PRGNR              PL TLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTW+ELY ES
Subjt:  KNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES

A0A5A7V9N3 Reverse transcriptase2.2e-1373.44Show/hide
Query:  RGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES
        RGNRSS            PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY ES
Subjt:  RGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES

A0A5D3BV68 Reverse transcriptase1.6e-1667.5Show/hide
Query:  VGKLIQFPTIVMKNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES
        VGKLIQ+PT  MK  PRGNR S             L TLSVLRDNDAVVEIELPVPDTLPTS ES  S+SSTW+ELY ES
Subjt:  VGKLIQFPTIVMKNAPRGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES

A0A5D3DSY7 Putative Retrotransposon protein2.2e-1373.44Show/hide
Query:  RGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES
        RGNRSS            PL TLSVLRDNDAVVEIELPVPDTLPTSAESS+S+SSTW+ELY ES
Subjt:  RGNRSS----------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGAAAGCTTATTCAATTTCCTACAATTGTCATGAAGAATGCGCCAAGAGGAAATAGGTCGAGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGA
TGCTGTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAAATCAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTCT
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGAAAGCTTATTCAATTTCCTACAATTGTCATGAAGAATGCGCCAAGAGGAAATAGGTCGAGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGA
TGCTGTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAAATCAAGCTCTAGTACGTGGGTGGAGTTGTATATTGAGTCT
Protein sequenceShow/hide protein sequence
MVGKLIQFPTIVMKNAPRGNRSSYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSKSSSSTWVELYIES