CuGenDBv2

Gene ID	Spg035174
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Genome location	scaffold4:24193253..24197801
RNA-Seq Expression	Spg035174
Synteny	Spg035174
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

4.9e-30

63.93

Show/hide

Query:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG
        EEVDNS + +QRTS+FDRIKP TT  SVFQR+SM   EEENQC  ST  R S F+RLS+S SKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N  
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG

Query:  EKLHSSILSRMKMKFSVLINTE
        +K+HS + SRMK K SV INTE
Subjt:  EKLHSSILSRMKMKFSVLINTE

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]

1.9e-29

63.93

Show/hide

Query:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG
        EEVDNS + +QRTSIFDRIKP TT   VFQR+SM   EEENQC  ST  R S F+RLS+S SKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N  
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG

Query:  EKLHSSILSRMKMKFSVLINTE
        +K+HS + SRMK K SV INTE
Subjt:  EKLHSSILSRMKMKFSVLINTE

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.2e-29

62.3

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Query:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG
        EEVDNS + +QRTS+FDRIKP TT  SVFQR+SM   EE+NQC  ST  R S F+RLS+S SKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N  
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG

Query:  EKLHSSILSRMKMKFSVLINTE
        +K+H+ + SRMK K SV INTE
Subjt:  EKLHSSILSRMKMKFSVLINTE

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.1e-29

63.93

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Query:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG
        +EVDNS + +QRTS+FDRIKP TT  SVFQR+SM   EEENQC  ST  R STF+RLS+S SKK RPSTS FDRLK+TNDQ +R+M  L+ K F E N  
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG

Query:  EKLHSSILSRMKMKFSVLINTE
        +K+HS + SRMK K SV INTE
Subjt:  EKLHSSILSRMKMKFSVLINTE

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]

3.2e-29

62.3

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Query:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG
        EEVDNS + +QRTS+FDRIKP TT  SVFQR+SM   EE+NQC  ST  R S F+RLS+S SKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N  
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG

Query:  EKLHSSILSRMKMKFSVLINTE
        +K+H+ + SRMK K SV INTE
Subjt:  EKLHSSILSRMKMKFSVLINTE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TQ06 Retrotransposon gag protein

2.4e-30

63.93

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Query:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG
        EEVDNS + +QRTS+FDRIKP TT  SVFQR+SM   EEENQC  ST  R S F+RLS+S SKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N  
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG

Query:  EKLHSSILSRMKMKFSVLINTE
        +K+HS + SRMK K SV INTE
Subjt:  EKLHSSILSRMKMKFSVLINTE

A0A5A7UI09 Retrotransposon gag protein

1.5e-29

62.3

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Query:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG
        EEVDNS + +QRTS+FDRIKP TT  SVFQR+SM   EE+NQC  ST  R S F+RLS+S SKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N  
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG

Query:  EKLHSSILSRMKMKFSVLINTE
        +K+H+ + SRMK K SV INTE
Subjt:  EKLHSSILSRMKMKFSVLINTE

A0A5A7VDY3 Ty3-gypsy retrotransposon protein

5.3e-30

63.93

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Query:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG
        +EVDNS + +QRTS+FDRIKP TT  SVFQR+SM   EEENQC  ST  R STF+RLS+S SKK RPSTS FDRLK+TNDQ +R+M  L+ K F E N  
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG

Query:  EKLHSSILSRMKMKFSVLINTE
        +K+HS + SRMK K SV INTE
Subjt:  EKLHSSILSRMKMKFSVLINTE

A0A5D3BBF9 Gag protease polyprotein

9.0e-30

63.93

Show/hide

Query:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG
        EEVDNS + +QRTSIFDRIKP TT   VFQR+SM   EEENQC  ST  R S F+RLS+S SKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N  
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG

Query:  EKLHSSILSRMKMKFSVLINTE
        +K+HS + SRMK K SV INTE
Subjt:  EKLHSSILSRMKMKFSVLINTE

A0A5D3CCI8 Retrotransposon gag protein

1.5e-29

62.3

Show/hide

Query:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG
        EEVDNS + +QRTS+FDRIKP TT  SVFQR+SM   EE+NQC  ST  R S F+RLS+S SKK RPSTS FDRLK+TNDQ +R+M +L+ K F E N  
Subjt:  EEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSG

Query:  EKLHSSILSRMKMKFSVLINTE
        +K+H+ + SRMK K SV INTE
Subjt:  EKLHSSILSRMKMKFSVLINTE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGAATAAATTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACA
AAGGACCTCCATCTTCGATCGCATCAAGCCTCCAACTACTTGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCT
CCGTTCGACCTTCAACTTTCCAAAGGCTAAGTGTCTCCGCATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAACGATCAACCAAAAAGA
AAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGCGGCGAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGATGAAGTTTTCTGTTCTCATAAATAC
GGAAGAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTTCGGTGTTCCGCTCACCCTAAGTTCGTTGTTCCCTCTTCCTCAAGTTTGAAAGTTCTTACAC
TATACGTTGTTGCGTTGTTCTTTCTCCAAGTTCGAGGTTTCTTACGTGGCACGTTACGGCGTTGTTCCTTCTCCGAGTTTGAAGGTTCTCACGTTGCGCTGCTTTGCTAT
TCCTTCTCCAAGTTCGAAGCTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCCGCTGCACGCTTCTGCGTTGCTCCTTCTCCAAGTTCGAAGGTTTGCA
CGTGTTGTTATGCTGCTTCGCTGTTGTTCCCTCTCCAAGTTCGAAGGTTCCCACGCTGCGCTGTTGTGTTACTTCCGTCTCCAACTTCAAGGTTGTCAAGTGCTACGCTA
TTTCGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCGGTTCCTTCTCTCCAAGTTCGAGGGTTCTTACGTTATACGCTACTGCATTGTTCTTTCTC
CAAGCTCGAAGGTTCTCCACTGCACGCTCCTGCGTTGCTCCTTCTCCAAGTTTGAAGGTTCTCGAGTGCTACGCTGTTGCGTTGCTTCCTTCTCCAAGTTCGAAGGTTCC
CACGCTGCACTGTTGTGCTGCTTCCTTCTCCAACTTCAAGGTTGTCAAGTGCTACGCTGGTTCGCAGTTTCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGTA
GTTCCTTCTCTCCAAGTTCAAAGACTCTCACATTGCTTCACTTCAATTCCTTCTCCAAGTTCGAAGGTTCTCACGCGCTTTGTTGTAGTTCCTTCTCTCCAAGTTTGAAG
TTCCTTCTCTCCAAGTTTGAAGGTTCTCACACGCTTCGCTACAGTTCCTTATCCAAGTTCGAAGGTGTTGGAGCCAATAGAGTCCATATAGGCTGTAAAATCGAAGAAAT
CTGGAGAAGACGCAAGCAGAAAAACAGCAGCAGAGGTTGCTGGTCGCGAGAGCGTCGGGACGCTCTACAAGTAGCGTCCCGACGCTGCAGAACAGATTTTCCAGAATCTG
GAAATTTCCAGTCCGATTCGGTTCAGCAGCCTGAGTTGGGATCCGGTTCGGTTTGCCTGCAGCTGGTTCAGCCCATTTACACACATTACAAGGTCGGTTCAGTCCATCGA
AGGGCGGTTCGGGACGGTTCGTGA

mRNA sequence

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Protein sequence

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MLNKFFSKTFHKKEKGNFVTSYCIDVEEVDNSEKGEQRTSIFDRIKPPTTCPSVFQRMSMVATEEENQCSVSTSVRPSTFQRLSVSASKKSRPSTSVFDRLKVTNDQPKR
KMDNLELKLFDEVNSGEKLHSSILSRMKMKFSVLINTEEDFIPPNLMSRSPQVRCSAHPKFVVPSSSSLKVLTLYVVALFFLQVRGFLRGTLRRCSFSEFEGSHVALLCY
SFSKFEASHAALLPSPSSKVLRCTLLRCSFSKFEGLHVLLCCFAVVPSPSSKVPTLRCCVTSVSNFKVVKCYAISQFLLSKFEGSHAFRCGSFSPSSRVLTLYATALFFL
QARRFSTARSCVAPSPSLKVLECYAVALLPSPSSKVPTLHCCAASFSNFKVVKCYAGSQFLLSKFEGSHALRCSSFSPSSKTLTLLHFNSFSKFEGSHALCCSSFSPSLK
FLLSKFEGSHTLRYSSLSKFEGVGANRVHIGCKIEEIWRRRKQKNSSRGCWSRERRDALQVASRRCRTDFPESGNFQSDSVQQPELGSGSVCLQLVQPIYTHYKVGSVHR
RAVRDGS

Spg035174 (gene) of Sponge gourd (cylindrica) v1 genome