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Spg035176 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg035176
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold4:24375559..24377015
RNA-Seq ExpressionSpg035176
SyntenySpg035176
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1962.89Show/hide
Query:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI
        QVESEA  G VGK+IQ+PTTFMK  PRGNR SLQTR+L KT+ I  ++ +   R    V   VEIELPVPDTLPTS ES  S+SSTW+ELY +SVH+
Subjt:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI

KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]4.4e-1965.17Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI
        PRGNR SLQT +L  TISIDYMTEILS RLYGTVCT                  VEIELPVPD LPTSAESS S+SSTW+ELY +SVH+
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]2.6e-1961.86Show/hide
Query:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI
        QVESEALFGMV K+IQ+PTTFM   PRGNR S QT KL KT                     VEIELPVPDTLPTSAESS S+SSTW+ELY +SVH+
Subjt:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1962.89Show/hide
Query:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI
        QVESEA  G VGK+IQ+PTTFMK  PRGNR SLQTR+L KT+ I  ++ +   R    V   VEIELPVPDTLPTS ES  S+SSTW+ELY +SVH+
Subjt:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.9e-1762.92Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI
        PR NR SLQT +L KT+SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW+ELY++SVH+
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase5.7e-2062.89Show/hide
Query:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI
        QVESEA  G VGK+IQ+PTTFMK  PRGNR SLQTR+L KT+ I  ++ +   R    V   VEIELPVPDTLPTS ES  S+SSTW+ELY +SVH+
Subjt:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI

A0A5A7THH5 Uncharacterized protein2.1e-1965.17Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI
        PRGNR SLQT +L  TISIDYMTEILS RLYGTVCT                  VEIELPVPD LPTSAESS S+SSTW+ELY +SVH+
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI

A0A5D3BET3 Uncharacterized protein1.3e-1961.86Show/hide
Query:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI
        QVESEALFGMV K+IQ+PTTFM   PRGNR S QT KL KT                     VEIELPVPDTLPTSAESS S+SSTW+ELY +SVH+
Subjt:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI

A0A5D3BV68 Reverse transcriptase5.7e-2062.89Show/hide
Query:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI
        QVESEA  G VGK+IQ+PTTFMK  PRGNR SLQTR+L KT+ I  ++ +   R    V   VEIELPVPDTLPTS ES  S+SSTW+ELY +SVH+
Subjt:  QVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI

A0A5D3CCC7 DNA/RNA polymerases superfamily protein9.0e-1862.92Show/hide
Query:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI
        PR NR SLQT +L KT+SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW+ELY++SVH+
Subjt:  PRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIKSVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAT
GGTTGGAAAGATTATTCAATTTCCTACAACTTTCATGAAGAATTCGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTATTTCTATTGACTACA
TGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTTCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGC
TCCAGTACGTGGGTGGAGTTGTATATTAAGTCTGTCCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAT
GGTTGGAAAGATTATTCAATTTCCTACAACTTTCATGAAGAATTCGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTATTTCTATTGACTACA
TGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTTCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGC
TCCAGTACGTGGGTGGAGTTGTATATTAAGTCTGTCCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQEDLWFSLVFRALWGVQVESEALFGMVGKIIQFPTTFMKNSPRGNRSSLQTRKLAKTISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSS
SSTWVELYIKSVHIVNVL